YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57095050, gi\|...
Organism:	Canis lupus familiaris
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57095050, gi|....

Description	E-value	Query Range	Subject Range
gi\|542150125\|ref... - PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X2 [Zonotrichia albicollis], PREDICTED: p... gi\|224048583 - gi\|224048583\|ref\|XP_002193977.1\| PREDICTED: protein tyrosine phosphatase type IVA, member 1 [Taeniop... gi\|56605916, gi\|... - gi\|56605916\|ref\|NP_001008461.1\| protein tyrosine phosphatase type IVA, member 1 [Gallus gallus], gi\|...	2.0E-43	[1..173]	[1..173]
gi\|60654551 - gi\|60654551\|gb\|AAX29966.1\| protein tyrosine phosphatase type IVA member 1 [synthetic construct]	2.0E-43	[1..173]	[1..173]
gi\|148235833, gi... - gi\|50604169\|gb\|AAH77539.1\| Ptp4a1-prov protein [Xenopus laevis], gi\|148235833\|ref\|NP_001086844.1\| pr...	4.0E-43	[1..173]	[1..173]
gi\|47212299 - gi\|47212299\|emb\|CAF90562.1\| unnamed protein product [Tetraodon nigroviridis]	4.0E-43	[1..173]	[1..173]
gi\|56118931, gi\|... - gi\|89273414\|emb\|CAJ82646.1\| protein tyrosine phosphatase type IVA, member 1 [Xenopus tropicalis], gi...	7.0E-43	[1..173]	[1..173]
TP4A1_PONPY - Protein tyrosine phosphatase type IVA protein 1 - Pongo pygmaeus (Orangutan) TP4A1_PONAB - Protein tyrosine phosphatase type IVA 1 OS=Pongo abelii GN=PTP4A1 PE=2 SV=1	1.0E-42	[1..173]	[1..173]
gi\|17528929 - gi\|17528929\|gb\|AAL38661.1\| protein tyrosine phosphatase 4a1 [Rattus norvegicus]	5.0E-42	[1..173]	[1..173]
gi\|73997089 - gi\|73997089\|ref\|XP_852876.1\| PREDICTED: similar to protein tyrosine phosphatase 4a1 isoform 1 [Canis...	9.0E-42	[1..173]	[1..173]
gi\|55715806, gi\|... - gi\|56090188\|ref\|NP_001007776.1\| protein tyrosine phosphatase type IVA, member 1 [Danio rerio], gi\|55...	1.0E-41	[1..173]	[1..173]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARMNRPAPV EVTYKNMRFL ITHNPTNATL NKFIEELKKY GVTTIVRVCE ATYDTTLVEK  60
   61 EGIHVLDWPF DDGAPPSNQI VDDWLSLVKI KFREEPGCCI AVHCVAGLGR APVLVALALI 120
  121 EGGMKYEDAV QFIRQKRRGA FNSKQLLYLE KYRPKMRLRF KDSNGHRNNC CIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1xm2A
Description:	Crystal structure of Human PRL-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits