YRC Public Data Repository - Protein Structure Prediction

Protein:	UREF_STAA3
Organism:	Staphylococcus aureus subsp. aureus USA300
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UREF_STAA3.

Description	E-value	Query Range	Subject Range
gi\|25507677 - pir\|\|G90027 urease accessory protein UreF [imported] - Staphylococcus aureus (strain N315) UREF_STAA1 - Urease accessory protein UreF OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=ureF PE=3 SV=1 UREF_STAAM - Urease accessory protein UreF OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ureF PE=3 SV=1 UREF_STAA2 - Urease accessory protein UreF OS=Staphylococcus aureus (strain JH1) GN=ureF PE=3 SV=1 UREF_STAA9 - Urease accessory protein UreF OS=Staphylococcus aureus (strain JH9) GN=ureF PE=3 SV=1 gi\|253314632 - gi\|253314632\|ref\|ZP_04837845.1\| urease accessory protein UreF [Staphylococcus aureus subsp. aureus s... gi\|269203922\|ref... - urease accessory protein UreF [Staphylococcus aureus subsp. aureus ED98] gi\|255007069 - gi\|255007069\|ref\|ZP_05145670.2\| urease accessory protein UreF [Staphylococcus aureus subsp. aureus M... UREF_STAAN - Urease accessory protein UreF OS=Staphylococcus aureus (strain N315) GN=ureF PE=3 SV=1	288.0	[0..1]	[229..1]
gi\|227246734, gi... - gi\|227556876\|ref\|ZP_03986923.1\| urease accessory protein UreF [Staphylococcus aureus subsp. aureus M... UREF_STAAR - Urease accessory protein UreF OS=Staphylococcus aureus (strain MRSA252) GN=ureF PE=3 SV=1	286.0	[0..1]	[229..1]
UREF_STAAB - Urease accessory protein UreF OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ureF PE=3 SV...	284.0	[0..1]	[229..1]
gi\|126143165 - gi\|126143165\|gb\|ABN80078.1\| urease accessory protein F [Staphylococcus leei] UREF_STAS1 - Urease accessory protein UreF OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 1530...	281.0	[0..1]	[229..1]
gi\|393298, gi\|10... - gi\|393298\|dbj\|BAA03327.1\| urease accessory protein [Bacillus sp. TB-90], pir\|\|E36950 ureF protein - ... UREF_BACSB - Urease accessory protein UreF OS=Bacillus sp. (strain TB-90) GN=ureF PE=3 SV=1	277.0	[0..4]	[229..2]
gi\|251812006, gi... - gi\|251812006\|ref\|ZP_04826479.1\| urease accessory protein UreF [Staphylococcus epidermidis BCM-HMP006... UREF_STAES - Urease accessory protein UreF OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ureF PE=3 SV=1	276.0	[0..1]	[229..1]
UREF_STAEQ - Urease accessory protein UreF OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ureF PE=3...	275.0	[0..1]	[229..1]
gi\|42738636, gi\|... - gi\|42782710\|ref\|NP_979957.1\| urease accessory protein UreF [Bacillus cereus ATCC 10987], gi\|42738636...	252.0	[0..6]	[229..9]
UREF_ACTP2 - Urease accessory protein UreF OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=ureF PE... gi\|53729258 - gi\|53729258\|ref\|ZP_00133789.2\| COG0830: Urease accessory protein UreF [Actinobacillus pleuropneumoni...	247.0	[0..5]	[229..3]
UREF_ACTPL - Urease accessory protein UreF OS=Actinobacillus pleuropneumoniae GN=ureF PE=3 SV=1	245.0	[0..5]	[229..3]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDHTHLRLF QFCDSQFPTG AFSHSFGLET YIQRNIIHDD HTFIAWLKMF LQEQLTYSDG  60
   61 LAMRLVYDAL ENDDTQKVLH IDKLMFVQNL PKETRVGAKQ MGTRMVKLAL ELYNSPWIAW 120
  121 YHQQMQDKKA KLNPAICFTM LGHHLGVDIE TIIDYYLYQN VSSLTQNAVR AIPLGQTAGQ 180
  181 KIVTHMIPYI EGTRKQIFEL KEADFGMTAP GLELNQMAHE NVNVRIFIS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	72.283997
Match:	PF01730.7
Description:	No description for PF01730.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits