YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57285915, gi\|...
Organism:	Staphylococcus aureus subsp. aureus COL
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57285915, gi|....

Description	E-value	Query Range	Subject Range
gi\|82750727, gi\|... - gi\|82750727\|ref\|YP_416468.1\| hypothetical protein SAB0984 [Staphylococcus aureus RF122], gi\|82656258...	179.0	[0..1]	[144..1]
gi\|251810573, gi... - gi\|251810573\|ref\|ZP_04825046.1\| YlbF like protein [Staphylococcus epidermidis BCM-HMP0060], gi\|25180... gi\|57866615, gi\|... - gi\|57866615\|ref\|YP_188292.1\| hypothetical protein SERP0709 [Staphylococcus epidermidis RP62A], gi\|57...	178.0	[0..1]	[144..1]
gi\|27467736, gi\|... - gi\|27467736\|ref\|NP_764373.1\| hypothetical protein SE0818 [Staphylococcus epidermidis ATCC 12228], gi...	177.0	[0..1]	[144..1]
gi\|68447558, gi\|... - gi\|70726834\|ref\|YP_253748.1\| hypothetical protein SH1833 [Staphylococcus haemolyticus JCSC1435], gi\|...	169.0	[0..1]	[144..1]
gi\|172057987, gi... - gi\|68055484\|ref\|ZP_00539629.1\| Protein of unknown function DUF1333 [Exiguobacterium sibiricum 255-15...	163.0	[0..1]	[143..2]
gi\|74490249, gi\|... - gi\|75762266\|ref\|ZP_00742153.1\| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israel...	155.0	[0..1]	[128..14]
gi\|46881561, gi\|... - gi\|46908290\|ref\|YP_014679.1\| hypothetical protein LMOf2365_2086 [Listeria monocytogenes str. 4b F236... gi\|254899247, gi... - gi\|254899247\|ref\|ZP_05259171.1\| hypothetical protein LmonJ_05524 [Listeria monocytogenes J0161], gi\|... gi\|153196562, gi... - gi\|254831704\|ref\|ZP_05236359.1\| hypothetical protein Lmon1_10133 [Listeria monocytogenes 10403S], gi... gi\|254912612, gi... - gi\|254912612\|ref\|ZP_05262624.1\| hypothetical protein LmonJ2_07446 [Listeria monocytogenes J2818], gi... gi\|133726624, gi... - gi\|153167915\|ref\|ZP_01927985.1\| hypothetical protein LMHG_02360 [Listeria monocytogenes FSL N1-017],... gi\|133729735, gi... - gi\|254827057\|ref\|ZP_05231744.1\| hypothetical protein LmonocytogeFSL_01255 [Listeria monocytogenes FS... gi\|153180088, gi... - gi\|254936939\|ref\|ZP_05268636.1\| hypothetical protein LmonF6_07426 [Listeria monocytogenes F6900], gi... gi\|254933483, gi... - gi\|254933483\|ref\|ZP_05266842.1\| hypothetical protein LmonH_13701 [Listeria monocytogenes HPB2262], g... gi\|254994486 - gi\|254994486\|ref\|ZP_05276676.1\| hypothetical protein LmonocytoFSL_16997 [Listeria monocytogenes FSL ... gi\|16804094 - gi\|16804094\|ref\|NP_465579.1\| hypothetical protein lmo2055 [Listeria monocytogenes EGD-e] gi\|254879657 - gi\|254879657\|ref\|ZP_05252367.1\| hypothetical protein LmonFSL_10694 [Listeria monocytogenes FSL J2-07... gi\|47013973, gi\|... - gi\|47097653\|ref\|ZP_00235171.1\| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F685... gi\|254854009 - gi\|254854009\|ref\|ZP_05243357.1\| hypothetical protein LmonoFSL_12154 [Listeria monocytogenes FSL R2-5... gi\|25359777, gi\|... - pir\|\|AG1331 hypothetical protein lmo2055 [imported] - Listeria monocytogenes (strain EGD-e), gi\|1641... gi\|254826190 - gi\|254826190\|ref\|ZP_05231191.1\| hypothetical protein LmonFS_13521 [Listeria monocytogenes FSL J1-194... gi\|226224661, gi... - gi\|226224661\|ref\|YP_002758768.1\| hypothetical protein Lm4b_02076 [Listeria monocytogenes Clip81459],... gi\|224501146 - gi\|224501146\|ref\|ZP_03669453.1\| hypothetical protein LmonFR_01265 [Listeria monocytogenes FSL R2-561...	155.0	[0..1]	[132..2]
gi\|73662977, gi\|... - gi\|73662977\|ref\|YP_301758.1\| hypothetical protein SSP1668 [Staphylococcus saprophyticus subsp. sapro...	155.0	[0..1]	[144..1]
gi\|29897577, gi\|... - gi\|30022021\|ref\|NP_833652.1\| hypothetical protein BC3933 [Bacillus cereus ATCC 14579], gi\|29897577\|g...	154.0	[0..1]	[128..6]
gi\|228987077, gi... - gi\|228987077\|ref\|ZP_04147202.1\| ComK regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1... gi\|206976704, gi... - gi\|206976704\|ref\|ZP_03237608.1\| ComK regulator [Bacillus cereus H3081.97], gi\|206745014\|gb\|EDZ56417.... gi\|229157511, gi... - gi\|229157511\|ref\|ZP_04285588.1\| ComK regulator [Bacillus cereus ATCC 4342], gi\|228625961\|gb\|EEK82711... gi\|229140660, gi... - gi\|229140660\|ref\|ZP_04269209.1\| ComK regulator [Bacillus cereus BDRD-ST26], gi\|228642798\|gb\|EEK99080... gi\|229198047, gi... - gi\|229198047\|ref\|ZP_04324759.1\| ComK regulator [Bacillus cereus m1293], gi\|228585405\|gb\|EEK43511.1\| ... gi\|217961416, gi... - gi\|217961416\|ref\|YP_002339984.1\| ComK regulator [Bacillus cereus AH187], gi\|217065959\|gb\|ACJ80209.1\|... gi\|222097381, gi... - gi\|222097381\|ref\|YP_002531438.1\| ComK regulator [Bacillus cereus Q1], gi\|221241439\|gb\|ACM14149.1\| Co... gi\|47557088, gi\|... - gi\|47565808\|ref\|ZP_00236847.1\| conserved hypothetical protein protein [Bacillus cereus G9241], gi\|47... gi\|42738955, gi\|... - gi\|42783028\|ref\|NP_980275.1\| ComK regulator [Bacillus cereus ATCC 10987], gi\|42738955\|gb\|AAS42883.1\|...	153.0	[0..1]	[128..3]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINEASLAIL DDIDELADMI VASDIYASFE QAKQALENND EAHLLYQSFL KSKEKYDEVM  60
   61 RFGKYHPDYK KVMLETRQRK RAYEMLDVVM HYKAREMALQ HLIDEVVTKI AYAVSEHVKI 120
  121 ETGNPFFQTS HSGCATGGSC NCSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.154902
Match:	2pihA
Description:	No description for 2pihA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits