YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237124, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237124, gi|....

Description	E-value	Query Range	Subject Range
MTNN_BACHD - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Bacillus halodurans (strain ATCC BAA-1... MTNN_BACHD - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Bacillus halodurans GN=mtnN PE=3 SV=1	200.0	[0..1]	[229..1]
MTNN_HAES1 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus somnus (strain 129Pt) GN=m...	200.0	[0..2]	[229..1]
MTNN_HISS2 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Histophilus somni (strain 2336) GN=mtn...	199.0	[0..2]	[229..1]
gi\|48826037 - ref\|ZP_00287265.1\| COG0775: Nucleoside phosphorylase [Enterococcus faecium] gi\|68196161, gi\|... - gi\|69244807\|ref\|ZP_00603031.1\| Purine and other phosphorylases, family 1 [Enterococcus faecium DO], ...	197.0	[0..2]	[229..1]
gi\|90961836, gi\|... - gi\|90961836\|ref\|YP_535752.1\| 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosida...	197.0	[0..2]	[228..1]
gi\|46128809 - gi\|46128809\|ref\|ZP_00201937.1\| COG0775: Nucleoside phosphorylase [Haemophilus influenzae R2846]	196.0	[0..2]	[229..1]
gi\|89095310, gi\|... - gi\|89095310\|ref\|ZP_01168229.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Oceanospi...	195.0	[0..3]	[229..19]
MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain CMCP6) GN=mt... MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus GN=mtnN PE=3 SV=1	195.0	[0..2]	[229..1]
MTNN_VIBVY - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain YJ016) GN=mt...	195.0	[0..2]	[229..1]
gi\|42631518 - gi\|42631518\|ref\|ZP_00157056.1\| COG0775: Nucleoside phosphorylase [Haemophilus influenzae R2866]	195.0	[0..2]	[229..1]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKIAILGAM SEEITPLLET LKDYTKIEHA NNTYYFAKYK NHELVLAYSK IGKVNSTLSA  60
   61 SVMIEKFGAQ ALLFTGVAGA FNPELEIGDL LYATKLAQYD LDITAFGHPL GFVPGNEIFI 120
  121 KTDEKLNNLA LEVAKELNIK LRAGIIATGD EFICDEAKKA KIREIFNADA CEMEGASVAL 180
  181 VCDALKVPCF ILRAMSDKAG EKAEFDFDEF VINSAKISAN FVLKMCEKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.30103
Match:	1zosA
Description:	No description for 1zosA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits