YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57165866, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57165866, gi|....

Description	E-value	Query Range	Subject Range
gi\|71914632, gi\|... - gi\|72160900\|ref\|YP_288557.1\| hypothetical protein Tfu_0496 [Thermobifida fusca YX], gi\|71914632\|gb\|A... gi\|48834834 - ref\|ZP_00291838.1\| COG1611: Predicted Rossmann fold nucleotide-binding protein [Thermobifida fusca]	222.0	[0..1]	[199..47]
gi\|114322008, gi... - gi\|78702009\|ref\|ZP_00866454.1\| Conserved hypothetical protein 730 [Alkalilimnicola ehrlichei MLHE-1]...	221.0	[0..1]	[198..27]
gi\|169818226, gi... - gi\|170736038\|ref\|YP_001777298.1\| hypothetical protein Bcenmc03_3656 [Burkholderia cenocepacia MC0-3]... gi\|124875287, gi... - gi\|254248786\|ref\|ZP_04942106.1\| conserved hypothetical protein [Burkholderia cenocepacia PC184], gi\|... gi\|67665011, gi\|... - gi\|67665011\|ref\|ZP_00462279.1\| Conserved hypothetical protein 730 [Burkholderia cenocepacia HI2424],... gi\|107026838, gi... - gi\|67656773\|ref\|ZP_00454154.1\| Conserved hypothetical protein 730 [Burkholderia cenocepacia AU 1054]...	218.0	[0..1]	[198..30]
gi\|88859608, gi\|... - gi\|88859608\|ref\|ZP_01134248.1\| hypothetical protein PTD2_21532 [Pseudoalteromonas tunicata D2], gi\|8...	218.0	[0..1]	[200..13]
gi\|84354116 - gi\|84354116\|ref\|ZP_00979032.1\| COG1611: Predicted Rossmann fold nucleotide-binding protein [Burkhold...	218.0	[0..1]	[198..25]
gi\|91689962, gi\|... - gi\|91777302\|ref\|YP_552510.1\| hypothetical protein Bxe_B2835 [Burkholderia xenovorans LB400], gi\|9168...	218.0	[0..1]	[198..30]
gi\|124898239, gi... - gi\|84360375\|ref\|ZP_00985079.1\| COG1611: Predicted Rossmann fold nucleotide-binding protein [Burkhold...	218.0	[0..1]	[198..30]
gi\|83652100, gi\|... - gi\|83718275\|ref\|YP_438804.1\| decarboxylase family protein [Burkholderia thailandensis E264], gi\|8365... gi\|167577152 - gi\|167577152\|ref\|ZP_02370026.1\| decarboxylase family protein [Burkholderia thailandensis TXDOH]	218.0	[0..1]	[198..30]
gi\|78063066, gi\|... - gi\|78063066\|ref\|YP_372974.1\| hypothetical protein Bcep18194_B2219 [Burkholderia sp. 383], gi\|7797095...	217.0	[0..1]	[198..30]
gi\|88802446, gi\|... - gi\|88802446\|ref\|ZP_01117973.1\| hypothetical protein PI23P_07650 [Polaribacter irgensii 23-P], gi\|887...	217.0	[0..1]	[200..28]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEKISQDLE KFANIPNLKN AVTFFGSARL KEDNFYYQQA KILAQKCVQN GFCVISGGGG  60
   61 GIMRAANEGA FSQNNNTNSM SSVGFNIFLP HEQKLNDFVE YNITFESLAI RKMALIEKSL 120
  121 AFVIFPGGFG TLDELCEILT LKQLEFKKDV PIILFGSEFW RGFDEFVRNS LLKLEVISKG 180
  181 DELKYKITDD LDFIINTLKE I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.045757
Match:	1wekA
Description:	Crystal structure of the conserved hypothetical protein TT1465 from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.829502297518847	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: