YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56413492, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56413492, gi|....

Description	E-value	Query Range	Subject Range
gi\|215266858, gi... - gi\|215488786\|ref\|YP_002331217.1\| acid-resistance protein [Escherichia coli O127:H6 str. E2348/69], g... gi\|91213014, gi\|... - gi\|91213014\|ref\|YP_543000.1\| acid-resistance protein [Escherichia coli UTI89], gi\|91074588\|gb\|ABE094... gi\|81247284, gi\|... - gi\|82545873\|ref\|YP_409820.1\| acid-resistance protein [Shigella boydii Sb227], gi\|81247284\|gb\|ABB6799... gi\|75231643, gi\|... - gi\|75231643\|ref\|ZP_00718001.1\| hypothetical protein EcolB7_01000327 [Escherichia coli B7A], gi\|19116... gi\|75211875, gi\|... - gi\|75211875\|ref\|ZP_00711939.1\| hypothetical protein EcolB_01001232 [Escherichia coli B171], gi\|19442... gi\|157162987, gi... - gi\|75197428\|ref\|ZP_00707498.1\| hypothetical protein EcolH_01003245 [Escherichia coli HS], gi\|1571629... gi\|75188275, gi\|... - gi\|75188275\|ref\|ZP_00701542.1\| hypothetical protein EcolE_01001520 [Escherichia coli E24377A], gi\|15... gi\|74313945, gi\|... - gi\|74313945\|ref\|YP_312364.1\| acid-resistance protein [Shigella sonnei Ss046], gi\|73857422\|gb\|AAZ9012... gi\|75260203 - gi\|75260203\|ref\|ZP_00731471.1\| hypothetical protein EcolE2_01000090 [Escherichia coli E22] gi\|75242696, gi\|... - gi\|75242696\|ref\|ZP_00726440.1\| hypothetical protein EcolF_01000609 [Escherichia coli F11], gi\|191170... gi\|192958149, gi... - gi\|75237450\|ref\|ZP_00721483.1\| hypothetical protein EcolE1_01001527 [Escherichia coli E110019], gi\|1... gi\|466646\|gb\|AAB... - alternate name 10K-S of D11109 [Escherichia coli] gi\|117625791, gi... - gi\|117625791\|ref\|YP_859114.1\| acid-resistance protein [Escherichia coli APEC O1], gi\|115514915\|gb\|AB... gi\|187730547, gi... - gi\|75179864\|ref\|ZP_00699851.1\| hypothetical protein SboyB_01000191 [Shigella boydii BS512], gi\|18773... gi\|194425274, gi... - gi\|83588633\|ref\|ZP_00927257.1\| hypothetical protein Ecol1_01000265 [Escherichia coli 101-1], gi\|1944... gi\|83571545 - gi\|83571545\|ref\|ZP_00922985.1\| hypothetical protein Sdys1_01000255 [Shigella dysenteriae 1012] gi\|227839547, gi... - gi\|227883668\|ref\|ZP_04001473.1\| acid-resistance protein [Escherichia coli 83972], gi\|227839547\|gb\|EE... gi\|237703275, gi... - gi\|237703275\|ref\|ZP_04533756.1\| hdeB [Escherichia sp. 3_2_53FAA], gi\|226902539\|gb\|EEH88798.1\| hdeB [... gi\|253322706, gi... - gi\|253771662\|ref\|YP_003034493.1\| acid-resistance protein [Escherichia coli BL21(DE3)], gi\|253322706\|... gi\|226839190, gi... - gi\|254038684\|ref\|ZP_04872740.1\| acid-resistance protein [Escherichia sp. 1_1_43], gi\|226839190\|gb\|EE... gi\|216432, gi\|20... - gi\|466646\|gb\|AAB18485.1\| alternate name 10K-S of D11109 [Escherichia coli str. K-12 substr. MG1655],... gi\|24054004, gi\|... - gi\|24114781\|ref\|NP_709291.1\| acid-resistance protein [Shigella flexneri 2a str. 301], gi\|24054004\|gb... gi\|26110571, gi\|... - gi\|26250142\|ref\|NP_756182.1\| acid-resistance protein [Escherichia coli CFT073], gi\|26110571\|gb\|AAN82... gi\|30043468, gi\|... - gi\|30065206\|ref\|NP_839377.1\| acid-resistance protein [Shigella flexneri 2a str. 2457T], gi\|30043468\|... gi\|1789925, gi\|1... - gb\|AAC76534.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi...	1.0E-48	[1..107]	[5..110]
gi\|188495721, gi... - gi\|75516030\|ref\|ZP_00738148.1\| hypothetical protein Ecol5_01000089 [Escherichia coli 53638], gi\|1884...	1.0E-48	[1..107]	[5..110]
gi\|82778662, gi\|... - gi\|82778662\|ref\|YP_405011.1\| acid-resistance protein [Shigella dysenteriae Sd197], gi\|81242810\|gb\|AB...	2.0E-48	[1..107]	[5..110]
gi\|208813481, gi... - gi\|208813481\|ref\|ZP_03254810.1\| HdeB protein [Escherichia coli O157:H7 str. EC4045], gi\|208734758\|gb... gi\|208740739, gi... - gi\|208820616\|ref\|ZP_03260936.1\| HdeB protein [Escherichia coli O157:H7 str. EC4042], gi\|208740739\|gb... gi\|15833643, gi\|... - gi\|15833643\|ref\|NP_312416.1\| hypothetical protein ECs4389 [Escherichia coli O157:H7], gi\|13363863\|db... gi\|209397371, gi... - gi\|209397371\|ref\|YP_002272985.1\| HdeB protein [Escherichia coli O157:H7 str. EC4115], gi\|209158771\|g... gi\|209755622, gi... - pir\|\|F86023 hypothetical protein hdeB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|217324848, gi... - gi\|217324848\|ref\|ZP_03440932.1\| HdeB protein [Escherichia coli O157:H7 str. TW14588], gi\|217321069\|g... gi\|189374259, gi... - gi\|189374259\|gb\|EDU92675.1\| HdeB protein [Escherichia coli O157:H7 str. EC869], gi\|168785371\|ref\|ZP_... gi\|254795461, gi... - gi\|254795461\|ref\|YP_003080298.1\| acid-resistance protein [Escherichia coli O157:H7 str. TW14359], gi... gi\|15804053, gi\|... - gi\|15804053\|ref\|NP_290089.1\| acid-resistance protein [Escherichia coli O157:H7 EDL933], gi\|12518218\|... gi\|168797336, gi... - gi\|189380093\|gb\|EDU98509.1\| HdeB protein [Escherichia coli O157:H7 str. EC508], gi\|168797336\|ref\|ZP_... gi\|195935036 - gi\|195935036\|ref\|ZP_03080418.1\| acid-resistance protein [Escherichia coli O157:H7 str. EC4024] gi\|208729127, gi... - gi\|208809326\|ref\|ZP_03251663.1\| HdeB protein [Escherichia coli O157:H7 str. EC4206], gi\|208729127\|gb... gi\|189369863, gi... - gi\|189369863\|gb\|EDU88279.1\| HdeB protein [Escherichia coli O157:H7 str. EC4501], gi\|168759589\|ref\|ZP... gi\|168765913, gi... - gi\|189364411\|gb\|EDU82830.1\| HdeB protein [Escherichia coli O157:H7 str. EC4486], gi\|168765913\|ref\|ZP... gi\|168772541, gi... - gi\|187771379\|gb\|EDU35223.1\| HdeB protein [Escherichia coli O157:H7 str. EC4196], gi\|168772541\|ref\|ZP... gi\|168779649, gi... - gi\|189002311\|gb\|EDU71297.1\| HdeB protein [Escherichia coli O157:H7 str. EC4076], gi\|168779649\|ref\|ZP... gi\|188018353, gi... - gi\|188018353\|gb\|EDU56475.1\| HdeB protein [Escherichia coli O157:H7 str. EC4113], gi\|168746956\|ref\|ZP... gi\|168753318, gi... - gi\|189359360\|gb\|EDU77779.1\| HdeB protein [Escherichia coli O157:H7 str. EC4401], gi\|168753318\|ref\|ZP... gi\|15833643, gi\|... - gi\|15833643\|ref\|NP_312416.1\| acid-resistance protein [Escherichia coli O157:H7 str. Sakai], gi\|13363...	4.0E-48	[1..107]	[5..110]
HDEB_SHIFL - Acid stress chaperone HdeB OS=Shigella flexneri GN=hdeB PE=3 SV=1 HDEB_ECOL6 - Protein hdeB OS=Escherichia coli O6 GN=hdeB PE=3 SV=1 gi\|110345346, gi... - gi\|110643754\|ref\|YP_671484.1\| acid-resistance protein [Escherichia coli 536], gi\|110345346\|gb\|ABG715... gi\|218707138, gi... - gi\|218707138\|ref\|YP_002414657.1\| acid-resistance protein [Escherichia coli UMN026], gi\|218434235\|emb... gi\|110616893, gi... - gi\|110807345\|ref\|YP_690865.1\| acid-resistance protein [Shigella flexneri 5 str. 8401], gi\|110616893\|... gi\|209920968, gi... - gi\|209920968\|ref\|YP_002295052.1\| acid-resistance protein [Escherichia coli SE11], gi\|209914227\|dbj\|B... gi\|218362827, gi... - gi\|218556059\|ref\|YP_002388972.1\| acid-resistance protein [Escherichia coli IAI1], gi\|218362827\|emb\|C... gi\|238902598, gi... - gi\|238902598\|ref\|YP_002928394.1\| acid-resistance protein [Escherichia coli BW2952], gi\|238859921\|gb\|... gi\|218367353, gi... - gi\|218560584\|ref\|YP_002393497.1\| acid-resistance protein [Escherichia coli S88], gi\|218367353\|emb\|CA... gi\|218697218, gi... - gi\|218697218\|ref\|YP_002404885.1\| acid-resistance protein [Escherichia coli 55989], gi\|218353950\|emb\|... EG11399 - acid-resistance protein / Periplasmic chaperone of acid-denatured proteins; H-NS repressed gi\|170018262, gi... - gi\|170018262\|ref\|YP_001723216.1\| acid-resistance protein [Escherichia coli ATCC 8739], gi\|169753190\|... gi\|253979488, gi... - gi\|254290181\|ref\|YP_003055929.1\| acid-resistance protein [Escherichia coli BL21(DE3)], gi\|253979488\|... gi\|89110504, gi\|... - gi\|89110504\|ref\|AP_004284.1\| acid-resistance protein [Escherichia coli str. K-12 substr. W3110], gi\|... gi\|170083020, gi... - gi\|170083020\|ref\|YP_001732340.1\| acid-resistance protein [Escherichia coli str. K-12 substr. DH10B],... gi\|192932526, gi... - gi\|193061736\|ref\|ZP_03042833.1\| HdeB protein [Escherichia coli E22], gi\|192932526\|gb\|EDV85123.1\| Hde... gi\|251786756, gi... - gi\|251786756\|ref\|YP_003001060.1\| hypothetical protein B21_03310 [Escherichia coli BL21], gi\|24237902... gi\|194420555, gi... - gi\|194431100\|ref\|ZP_03063393.1\| HdeB protein [Shigella dysenteriae 1012], gi\|194420555\|gb\|EDX36631.1... gi\|254163431, gi... - gi\|254163431\|ref\|YP_003046539.1\| acid-resistance protein [Escherichia coli B str. REL606], gi\|253975... EG11399 - acid-resistance protein / Periplasmic chaperone of acid-denatured proteins; H-NS repressed gi\|124500415, gi... - gi\|124528574\|ref\|ZP_01699852.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500415\|gb... HDEB_ECOL6 - Acid stress chaperone HdeB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=hdeB PE... HDEB_ECOLI - Protein hdeB precursor (10K-L protein) - Escherichia coli	5.0E-48	[1..107]	[1..106]
gi\|149291848, gi... - gi\|149365435\|ref\|ZP_01887470.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149291848\|... gi\|108780309, gi... - gi\|108808396\|ref\|YP_652312.1\| acid-resistance protein [Yersinia pestis Antiqua], gi\|108780309\|gb\|ABG... gi\|229681498, gi... - gi\|229901569\|ref\|ZP_04516691.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229681498\|g... gi\|229688343, gi... - gi\|229898795\|ref\|ZP_04513940.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|229701381, gi... - gi\|229895575\|ref\|ZP_04510746.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970138... gi\|229694596, gi... - gi\|229838230\|ref\|ZP_04458389.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|165925327, gi... - gi\|165925327\|ref\|ZP_02221159.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166008334, gi... - gi\|166008334\|ref\|ZP_02229232.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... Q667Q7\|Q667Q7_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|166206542, gi... - gi\|166212611\|ref\|ZP_02238646.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167398992, gi... - gi\|167398992\|ref\|ZP_02304516.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167421336, gi... - gi\|167421336\|ref\|ZP_02313089.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167423407, gi... - gi\|167423407\|ref\|ZP_02315160.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167467821 - gi\|167467821\|ref\|ZP_02332525.1\| hypothetical protein YpesF_07969 [Yersinia pestis FV-1] gi\|162418119, gi... - gi\|77635019\|ref\|ZP_00797109.1\| hypothetical protein YpesA_01001641 [Yersinia pestis Angola], gi\|1624... gi\|152960570, gi... - gi\|77629968\|ref\|ZP_00792554.1\| hypothetical protein YpseI_01001324 [Yersinia pseudotuberculosis IP 3... gi\|22125146, gi\|... - gi\|22125146\|ref\|NP_668569.1\| acid-resistance protein [Yersinia pestis KIM], gi\|21958006\|gb\|AAM84820.... gi\|25333360 - pir\|\|AB0326 probable exported protein YPO2674 [imported] - Yersinia pestis (strain CO92) gi\|51597250, gi\|... - gi\|51597250\|ref\|YP_071441.1\| acid-resistance protein [Yersinia pseudotuberculosis IP 32953], gi\|5159... gi\|45437122, gi\|... - gi\|45442258\|ref\|NP_993797.1\| acid-resistance protein [Yersinia pestis biovar Microtus str. 91001], g... gi\|16122879, gi\|... - gi\|218929747\|ref\|YP_002347622.1\| acid-resistance protein [Yersinia pestis CO92], gi\|16122879\|ref\|NP_... gi\|89102191, gi\|... - gi\|89102191\|ref\|ZP_01174844.1\| hypothetical protein Ypesb_01003765 [Yersinia pestis biovar Orientali...	7.0E-32	[35..105]	[32..102]
gi\|77961639 - gi\|77961639\|ref\|ZP_00825472.1\| hypothetical protein YmolA_01002104 [Yersinia mollaretii ATCC 43969]	4.0E-31	[35..105]	[34..104]
gi\|77957758 - gi\|77957758\|ref\|ZP_00821806.1\| hypothetical protein YberA_01002038 [Yersinia bercovieri ATCC 43970]	2.0E-30	[35..105]	[35..105]
gi\|77978453, gi\|... - gi\|77978453\|ref\|ZP_00833882.1\| hypothetical protein YintA_01001798 [Yersinia intermedia ATCC 29909],...	2.0E-30	[35..103]	[37..105]
gi\|77973088, gi\|... - gi\|77973088\|ref\|ZP_00828640.1\| hypothetical protein YfreA_01003078 [Yersinia frederiksenii ATCC 3364...	4.0E-30	[37..105]	[39..107]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFSLATAG IIVAALVTSV SVNAATDTTK TNVTPKGMSC QEFVDLNPQT MAPVAFWVLN  60
   61 EDEDFKGGDY VDFQETETTA VPLAVELCKK NPQSELSKIK DEIKKELSK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.41
Match:	1bg8A
Description:	Protein HNS-dependent expression A; HdeA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits