YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|85674415, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	536 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|85674415, gi|....

Description	E-value	Query Range	Subject Range
gi\|22778813, gi\|... - gi\|23100580\|ref\|NP_694047.1\| xylan 1,4-beta-xylosidase [Oceanobacillus iheyensis HTE831], gi\|2277881...	442.0	[0..3]	[535..4]
gi\|89097108, gi\|... - gi\|89097108\|ref\|ZP_01169998.1\| xylan 1,4-beta-xylosidase [Bacillus sp. NRRL B-14911], gi\|89087931\|gb...	441.0	[0..3]	[535..4]
gi\|149905403, gi... - gi\|82744615\|ref\|ZP_00907130.1\| beta-xylosidase, family 43 glycosyl hydrolase [Clostridium beijerinck...	438.0	[0..1]	[535..2]
gi\|185177920, gi... - gi\|2773302\|gb\|AAB97967.1\| xylosidase/arabinosidase [Selenomonas ruminantium], gi\|185177920\|pdb\|3C2U\|...	436.0	[0..1]	[536..1]
gi\|93279339, gi\|... - gi\|93279339\|pdb\|2EXH\|D Chain D, Structure Of The Family43 Beta-Xylosidase From Geobacillus Stearothe...	432.0	[0..2]	[536..3]
gi\|4038456 - gi\|4038456\|gb\|AAC97375.1\| xylan 1,4-beta-xylosidase [Bacillus pumilus]	430.0	[0..1]	[535..1]

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Predicted Domain #1

Region A:
Residues: [1-536]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITNPILTG FNPDPSLCRQ GEDYYIATST FEWFPGVRIY HSRDLKNWSL VSTPLDRVSM  60
   61 LDMKGNPDSG GIWAPCLSYA DGKFWLLYTD VKIVDSPWKN GRNFLVTAPS IEGPWSEPIP 120
  121 MGNGGFDPSL FHDDDGRKYY IYRPWGPRHH SNPHNTIVLQ AFDPQTGTLS PERKTLFTGT 180
  181 PLCYTEGAHL YRHAGWYYLM AAEGGTSYEH AVVVLRSKNI DGPYELHPDV TMMTSWHLPE 240
  241 NPLQKSGHGS LLQTHTGEWY MAYLTSRPLR LPGVPLLASG GRGYCPLGRE TGIARIEWRD 300
  301 GWPYVEGGKH AQLTVKGPQV AEQPAAVPGN WRDDFDASSL DPELQTLRIP FDDTLGSLTA 360
  361 RPGFLRLYGN DSLNSTFTQS TVARRWQHFA FRAETRMEFS PVHFQQSAGL TCYYNSKNWS 420
  421 YCFVDYEEGQ GRTIKVIQLD HNVPSWPLHE QPIPVPEHAE SVWLRVDVDT LVYRYSYSFD 480
  481 GETWHTVPVT YEAWKLSDDY IGGRGFFTGA FVGLHCEDIS GDGCYADFDY FTYEPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	121.0
Match:	2exhA
Description:	No description for 2exhA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.395515943343317	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: