YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55715466
Organism:	Drosophila simulans
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55715466.

Description	E-value	Query Range	Subject Range
gi\|55715352 - gi\|55715352\|gb\|AAV59151.1\| enhancer of split m4 protein [Drosophila melanogaster]	232.0	[0..1]	[152..1]
gi\|194908133, gi... - gi\|194908133\|ref\|XP_001981712.1\| GG12205 [Drosophila erecta], gi\|190656350\|gb\|EDV53582.1\| GG12205 [D... gi\|55714967 - gi\|55714967\|gb\|AAV59026.1\| enhancer of split m4 protein [Drosophila yakuba]	232.0	[0..1]	[152..1]
gi\|55715456 - gi\|55715456\|gb\|AAV59247.1\| enhancer of split m4 protein [Drosophila simulans]	227.0	[0..1]	[152..1]
gi\|125776137\|ref... - GA19352-PA [Drosophila pseudoobscura], GA19352 [Drosophila pseudoobscura pseudoobscura] gi\|195151949, gi... - gi\|195151949\|ref\|XP_002016901.1\| GL22019 [Drosophila persimilis], gi\|194111958\|gb\|EDW34001.1\| GL2201... gi\|125776137, gi... - gi\|54638921\|gb\|EAL28323.1\| GA19352 [Drosophila pseudoobscura pseudoobscura], gi\|125776137\|ref\|XP_001...	204.0	[0..1]	[152..1]
gi\|4836360 - gi\|4836360\|gb\|AAD30421.1\|AF115458_1 E(spl)m4 [Drosophila hydei]	187.0	[0..1]	[152..1]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCQNKINTNN TMTIKSNKKL SYSVKKLLQK IFKQQQRVEE EQNLKNALKA NSLESLESME  60
   61 NSRNADLESA SICASLESCE NEANERLSQS CEIEDYDFEQ LPTVPVHFVR TAHGTFFWTA 120
  121 VSDLPADNDL VEPLYCSTSN AIAIPQDRWV QA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits