YRC Public Data Repository - Protein Structure Prediction

Protein:	RECO_SALPA
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RECO_SALPA.

Description	E-value	Query Range	Subject Range
gi\|1228148 - gi\|1228148\|gb\|AAA92442.1\| RecO gi\|1228148\|gb\|AA... - RecO	7.0E-69	[1..242]	[1..241]
RECO_SHIFL - DNA repair protein RecO OS=Shigella flexneri GN=recO PE=3 SV=1 gi\|24053008, gi\|... - gi\|24113907\|ref\|NP_708417.1\| DNA repair protein RecO [Shigella flexneri 2a str. 301], gi\|24053008\|gb... gi\|30042223, gi\|... - gi\|30063967\|ref\|NP_838138.1\| DNA repair protein RecO [Shigella flexneri 2a str. 2457T], gi\|30042223\|...	1.0E-68	[1..239]	[1..239]
RECO_SHIF8 - DNA repair protein RecO OS=Shigella flexneri serotype 5b (strain 8401) GN=recO PE=3 SV=1	2.0E-68	[1..239]	[1..239]
RECO_ECOLU - DNA repair protein RecO OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=recO PE=3 SV=1 RECO_ECOSM - DNA repair protein RecO OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=recO PE=3 SV=1 RECO_ECOSE - DNA repair protein RecO OS=Escherichia coli (strain SE11) GN=recO PE=3 SV=1 gi\|218696193, gi... - gi\|218696193\|ref\|YP_002403860.1\| DNA repair protein RecO [Escherichia coli 55989], gi\|218352925\|emb\|... RECO_ECO7I - DNA repair protein RecO OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=recO PE=3 SV=1 RECO_ESCF3 - DNA repair protein RecO OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=r... RECO_ECO8A - DNA repair protein RecO OS=Escherichia coli O8 (strain IAI1) GN=recO PE=3 SV=1 gi\|194429295, gi... - gi\|75209489\|ref\|ZP_00709714.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... RECO_ECOHS - DNA repair protein RecO OS=Escherichia coli O9:H4 (strain HS) GN=recO PE=3 SV=1 RECO_ECO24 - DNA repair protein RecO OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=recO PE=3 SV=1 gi\|83570801, gi\|... - gi\|83570801\|ref\|ZP_00922244.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Shigella ... RECO_SHISS - DNA repair protein RecO OS=Shigella sonnei (strain Ss046) GN=recO PE=3 SV=1 gi\|75257989, gi\|... - gi\|75257989\|ref\|ZP_00729463.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... gi\|75237689, gi\|... - gi\|75237689\|ref\|ZP_00721705.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... gi\|75228860, gi\|... - gi\|75228860\|ref\|ZP_00715461.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich...	2.0E-68	[1..239]	[1..239]
RECO_ECOL6 - DNA repair protein recO OS=Escherichia coli O6 GN=recO PE=3 SV=1 gi\|85675456, gi\|... - gi\|89109371\|ref\|AP_003151.1\| gap repair protein [Escherichia coli str. K-12 substr. W3110], gi\|85675... gi\|195936712 - gi\|195936712\|ref\|ZP_03082094.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4024] RECO_SHIDS - DNA repair protein RecO OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=recO PE=3 SV=1 gi\|208808195, gi... - gi\|208808195\|ref\|ZP_03250532.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|188487417, gi... - gi\|75513175\|ref\|ZP_00735617.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... gi\|208813327, gi... - gi\|208813327\|ref\|ZP_03254656.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|75237416, gi\|... - gi\|75237416\|ref\|ZP_00721451.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... RECO_ECOK1 - DNA repair protein RecO OS=Escherichia coli O1:K1 / APEC GN=recO PE=3 SV=1 gi\|208821700, gi... - gi\|208821700\|ref\|ZP_03262020.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4042], gi\|2... RECO_ECOL6 - DNA repair protein RecO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=recO PE=3 ... gi\|124499853, gi... - gi\|124529546\|ref\|ZP_01700516.1\| DNA repair protein RecO [Escherichia coli B], gi\|124499853\|gb\|EAY473... RECO_ECO5E - DNA repair protein RecO OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=recO PE=3 SV=1 RECO_ECO57 - DNA repair protein RecO OS=Escherichia coli O157:H7 GN=recO PE=3 SV=1 gi\|217327334, gi... - gi\|217327334\|ref\|ZP_03443417.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. TW14588], gi\|... EG10832 - gap repair protein / Conjugational recombination and repair; DNA-binding protein; RecA-like strand a... RECO_ECO45 - DNA repair protein RecO OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=recO PE=3 SV=1 gi\|15803091, gi\|... - gi\|15803091\|ref\|NP_289122.1\| DNA repair protein RecO [Escherichia coli O157:H7 EDL933], gi\|12516982\|... gi\|218690681, gi... - gi\|218690681\|ref\|YP_002398893.1\| DNA repair protein RecO [Escherichia coli ED1a], gi\|218428245\|emb\|C... gi\|194423431, gi... - gi\|83586783\|ref\|ZP_00925414.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... RECO_ECOUT - DNA repair protein RecO OS=Escherichia coli (strain UTI89 / UPEC) GN=recO PE=3 SV=1 gi\|13362902, gi\|... - gi\|15832685\|ref\|NP_311458.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. Sakai], gi\|13362... RECO_ECOL5 - DNA repair protein RecO OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=recO PE=3 SV=1 RECO_ECOLC - DNA repair protein RecO OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=recO PE=3 SV=1 gi\|168757774, gi... - gi\|189355304\|gb\|EDU73723.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|189368475, gi... - gi\|189368475\|gb\|EDU86891.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|254593915, gi... - gi\|254794515\|ref\|YP_003079352.1\| gap repair protein [Escherichia coli O157:H7 str. TW14359], gi\|2545... gi\|189362323, gi... - gi\|189362323\|gb\|EDU80742.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|253974441, gi... - gi\|254162540\|ref\|YP_003045648.1\| DNA repair protein RecO [Escherichia coli B str. REL606], gi\|253974... gi\|187770738, gi... - gi\|187770738\|gb\|EDU34582.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|253772536, gi... - gi\|254289301\|ref\|YP_003055049.1\| DNA repair protein RecO [Escherichia coli BL21(DE3)], gi\|253978608\|... gi\|189003617, gi... - gi\|189003617\|gb\|EDU72603.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4076], gi\|16877... gi\|242378166, gi... - gi\|251785893\|ref\|YP_003000197.1\| hypothetical protein B21_02423 [Escherichia coli BL21], gi\|24237816... gi\|168787925, gi... - gi\|189372382\|gb\|EDU90798.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC869], gi\|168787... gi\|238861284, gi... - gi\|238901730\|ref\|YP_002927526.1\| gap repair protein [Escherichia coli BW2952], gi\|238861284\|gb\|ACR63... gi\|189378575, gi... - gi\|189378575\|gb\|EDU96991.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC508], gi\|168798... gi\|226901441, gi... - gi\|237705075\|ref\|ZP_04535556.1\| gap repair protein RecO [Escherichia sp. 3_2_53FAA], gi\|226901441\|gb... RECO_ECODH - DNA repair protein RecO OS=Escherichia coli (strain K12 / DH10B) GN=recO PE=3 SV=1 gi\|227835951, gi... - gi\|227887601\|ref\|ZP_04005406.1\| recombination protein O [Escherichia coli 83972], gi\|227835951\|gb\|EE... RECO_ECOLI - DNA repair protein recO (Recombination protein O) - Escherichia coli EG10832 - gap repair protein / Conjugational recombination and repair; DNA-binding protein; RecA-like strand a... gi\|168748365, gi... - gi\|188017100\|gb\|EDU55222.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4113], gi\|16874...	3.0E-68	[1..239]	[1..239]
RECO_SHIB3 - DNA repair protein RecO OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=recO PE=3 SV=... RECO_SHIBS - DNA repair protein RecO OS=Shigella boydii serotype 4 (strain Sb227) GN=recO PE=3 SV=1	6.0E-68	[1..239]	[1..239]
gi\|1033154\|gb\|AA... - CG Site No. 17962 gi\|1033154 - gi\|1033154\|gb\|AAA79827.1\| CG Site No. 17962	2.0E-67	[1..239]	[1..239]
RECO_VIBVY - DNA repair protein RecO OS=Vibrio vulnificus (strain YJ016) GN=recO PE=3 SV=1	2.0E-66	[5..241]	[8..243]
gi\|22125199, gi\|... - gi\|22125199\|ref\|NP_668622.1\| DNA repair protein RecO [Yersinia pestis KIM], gi\|21958064\|gb\|AAM84873.... gi\|45442306, gi\|... - gi\|45442306\|ref\|NP_993845.1\| DNA repair protein RecO [Yersinia pestis biovar Microtus str. 91001], g...	3.0E-66	[1..237]	[3..239]
RECO_YERPP - DNA repair protein RecO OS=Yersinia pestis (strain Pestoides F) GN=recO PE=3 SV=1 gi\|149365388, gi... - gi\|149365388\|ref\|ZP_01887423.1\| DNA repair protein [Yersinia pestis CA88-4125], gi\|149291801\|gb\|EDM4... gi\|161484839 - gi\|161484839\|ref\|NP_668622.2\| DNA repair protein RecO [Yersinia pestis KIM] RECO_YERPY - DNA repair protein RecO OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=recO PE=3 SV=1 RECO_YERPG - DNA repair protein RecO OS=Yersinia pestis bv. Antiqua (strain Angola) GN=recO PE=3 SV=1 RECO_YERPB - DNA repair protein RecO OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=recO PE=3 SV=1 gi\|16122924, gi\|... - gi\|218929792\|ref\|YP_002347667.1\| DNA repair protein RecO [Yersinia pestis CO92], gi\|16122924\|ref\|NP_... RECO_YERP3 - DNA repair protein RecO OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=recO PE=3 ... RECO_YERPS - DNA repair protein RecO OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=recO PE=3 SV=1 gi\|161511351 - gi\|161511351\|ref\|NP_993845.2\| DNA repair protein RecO [Yersinia pestis biovar Microtus str. 91001] gi\|165925301, gi... - gi\|165925301\|ref\|ZP_02221133.1\| DNA repair protein RecO [Yersinia pestis biovar Orientalis str. F199... gi\|165992625, gi... - gi\|166008243\|ref\|ZP_02229141.1\| DNA repair protein RecO [Yersinia pestis biovar Antiqua str. E197900... gi\|166212406, gi... - gi\|166212406\|ref\|ZP_02238441.1\| DNA repair protein RecO [Yersinia pestis biovar Antiqua str. B420030... gi\|167399560, gi... - gi\|167399560\|ref\|ZP_02305084.1\| DNA repair protein RecO [Yersinia pestis biovar Antiqua str. UG05-04... gi\|167421237, gi... - gi\|167421237\|ref\|ZP_02312990.1\| DNA repair protein RecO [Yersinia pestis biovar Orientalis str. MG05... gi\|167423802, gi... - gi\|167423802\|ref\|ZP_02315555.1\| DNA repair protein RecO [Yersinia pestis biovar Mediaevalis str. K19... gi\|167467392 - gi\|167467392\|ref\|ZP_02332096.1\| DNA repair protein RecO [Yersinia pestis FV-1] RECO_YERPE - DNA repair protein RecO OS=Yersinia pestis GN=recO PE=3 SV=1 RECO_YERPS - DNA repair protein recO OS=Yersinia pseudotuberculosis GN=recO PE=3 SV=1 RECO_YERPA - DNA repair protein RecO OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=recO PE=3 SV=1 RECO_YERPN - DNA repair protein RecO OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=recO PE=3 SV=1 gi\|89101407, gi\|... - gi\|89101407\|ref\|ZP_01174179.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Yersinia ... gi\|229898847, gi... - gi\|229898847\|ref\|ZP_04513992.1\| gap repair protein [Yersinia pestis biovar Orientalis str. India 195... gi\|229701327, gi... - gi\|229895521\|ref\|ZP_04510692.1\| gap repair protein [Yersinia pestis Pestoides A], gi\|229701327\|gb\|EE... gi\|229838283, gi... - gi\|229838283\|ref\|ZP_04458442.1\| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2], g...	4.0E-66	[1..237]	[1..237]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGWQRAFVL HSRPWSETSL MLDVFTEESG RVRLVAKGAR SKRSNLKGAL QPFTPLLLRY  60
   61 SGRGEVKTLR SAEAVSLALP LSGITLYSGL YINELLSRVL EYETRFSELF FDYLNCIQAL 120
  121 AGTTGSPEPA LRRFELALLG HLGYGVNFTH CAGSGERVDD TMTYRYREEK GFFASVVIDN 180
  181 NTFTGRHLKA LEAREFPDVD TLRAAKRFTR MALKPYLGGK PLKSRELFRQ FMPKRTVKTK 240
  241 KD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1u5kA
Description:	Recombinational repair protein RecO
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits