YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123984537, gi...
Organism:	synthetic construct
Length:	374 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123984537, gi....

Description	E-value	Query Range	Subject Range
gi\|148227942, gi... - gi\|83405982\|gb\|AAI10704.1\| LOC398230 protein [Xenopus laevis], gi\|148227942\|ref\|NP_001082108.1\| Tram...	0.0	[1..374]	[1..373]
gi\|89268638, gi\|... - gi\|89268638\|emb\|CAJ82457.1\| translocation associated membrane protein 1 [Xenopus tropicalis], gi\|475...	0.0	[1..374]	[1..373]
TRAM1_RAT - Translocating chain-associated membrane protein 1 OS=Rattus norvegicus GN=Tram1 PE=1 SV=3	0.0	[1..374]	[1..374]
TRAM1_MOUSE - Translocating chain-associated membrane protein 1 OS=Mus musculus GN=Tram1 PE=1 SV=3	0.0	[1..374]	[1..374]
TRAM1_CANLF - Translocating chain-associated membrane protein 1 OS=Canis lupus familiaris GN=TRAM1 PE=1 SV=2	0.0	[1..374]	[1..374]
TRAM1_BOVIN - Translocating chain-associated membrane protein 1 OS=Bos taurus GN=TRAM1 PE=2 SV=3	0.0	[1..374]	[1..374]
gi\|55630806 - gi\|55630806\|ref\|XP_519803.1\| PREDICTED: translocating chain-associating membrane protein [Pan troglo...	0.0	[1..374]	[1..374]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRKKSTKS PPVLSHEFVL QNHADIVSCV AMVFLLGLMF EITAKASIIF VTLQYNVTLP  60
   61 ATEEQATESV SLYYYGIKDL ATVFFYMLVA IIIHAVIQEY MLDKINRRMH F

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.744727
Match:	PF08390.2
Description:	No description for PF08390.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-336]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKTKHSKFNE SGQLSAFYLF ACVWGTFILI SENYISDPTI LWRAYPHNLM TFQMKFFYIS  60
   61 QLAYWLHAFP ELYFQKTKKE DIPRQLVYIG LYLFHIAGAY LLNLNHLGLV LLVLHYFVEF 120
  121 LFHISRLFYF SNEKYQKGFS LWAVLFVLGR LLTLILSVLT VGFGLARAEN QKLDFSTGNF 180
  181 NVLAVRIAVL ASICVTQAFM MWKFINFQLR RWREHSAFQA PAVKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	64.537602
Match:	PF03798.7
Description:	No description for PF03798.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [337-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPTVTKGRSS KKGTENGVNG TLTSNVADSP RNKKEKSS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.994
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits