YRC Public Data Repository - Protein Structure Prediction

Protein:	VATE1_MACFA
Organism:	Macaca fascicularis
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATE1_MACFA.

Description	E-value	Query Range	Subject Range
gi\|45360895, gi\|... - gi\|45360895\|ref\|NP_989123.1\| ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E [Xenopus (Silura...	3.0E-67	[1..226]	[1..226]
gi\|37221539 - gi\|37221539\|gb\|AAQ89897.1\| V-type H+ ATPase subunit E [Oreochromis mossambicus]	1.0E-65	[1..226]	[1..226]
gi\|148222767, gi... - gi\|32450118\|gb\|AAH54191.1\| MGC64332 protein [Xenopus laevis], gi\|148222767\|ref\|NP_001079767.1\| hypot...	3.0E-65	[1..226]	[1..226]
gi\|60652551, gi\|... - gi\|60652551\|gb\|AAX28970.1\| ATPase H+ transporting lysosomal 31kDa V1 subunit E isoform 1 [synthetic ...	3.0E-65	[1..226]	[1..226]
gi\|313014 - gi\|313014\|emb\|CAA50592.1\| vacuolar proton ATPase [Homo sapiens]	9.0E-65	[1..226]	[1..226]
VATE1_RAT - V-type proton ATPase subunit E 1 OS=Rattus norvegicus GN=Atp6v1e1 PE=1 SV=1	1.0E-64	[1..226]	[1..226]
gi\|57106611 - gi\|57106611\|ref\|XP_534937.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit E isoform 1 i...	3.0E-64	[1..226]	[1..226]
VATE1_MOUSE - V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2 gi\|55716072 - gb\|AAH86095.1\| Unknown (protein for MGC:98473) [Xenopus laevis] tr\|M3W8X9\|M3W8X9... - ATPase H+ transporting V1 subunit E1 OS=Felis catus GN=ATP6V1E1 PE=3 SV=1	4.0E-64	[1..226]	[1..226]
VATE1_BOVIN - V-type proton ATPase subunit E 1 OS=Bos taurus GN=ATP6V1E1 PE=2 SV=1	5.0E-64	[1..226]	[1..226]

Back

Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSDADVQK QIKHMMAFIE QEANEKAEEI DAKAEEEFNI EKGRLVQTQR LKIMEYYEKK  60
   61 EKQIEQQKKI QMSNLMNQAR LKVLRARDDL ITDLLNEAKQ RLSKVVKDTT RYQVLLDGLV 120
  121 LQGLYQLLEP RMIVRCRKQD FPLVKAAVQK AIPMYKIATK NDVDVQIDQE SYLPEDIAGG 180
  181 VEIYNGDRKI KVSNTLESRL DLIAQQMMPE VRGALFGANA NRKFLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.09691
Match:	2dm9A
Description:	No description for 2dm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits