YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61356697, gi\|...
Organism:	synthetic construct
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61356697, gi|....

Description	E-value	Query Range	Subject Range
gi\|73989304 - gi\|73989304\|ref\|XP_851466.1\| PREDICTED: similar to general transcription factor IIF, polypeptide 2 [...	396.0	[0..1]	[249..108]
T2FB_BOVIN - General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1	382.0	[0..1]	[249..1]
gi\|62901918 - gi\|62901918\|gb\|AAY18910.1\| RAP30 [synthetic construct]	382.0	[0..2]	[249..26]
CCDS9395.1_1 - null gi\|109120627 - gi\|109120627\|ref\|XP_001094507.1\| PREDICTED: general transcription factor IIF, polypeptide 2, 30kDa [...	382.0	[0..1]	[249..1]
gi\|31542922, gi\|... - gi\|60552080\|gb\|AAH91112.1\| General transcription factor IIF, polypeptide 2 [Rattus norvegicus], pir\|...	381.0	[0..1]	[249..1]
T2FB_MOUSE - General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1	381.0	[0..1]	[249..1]
gi\|50730835 - gi\|50730835\|ref\|XP_417039.1\| PREDICTED: similar to General transcription factor IIF, polypeptide 2 [...	374.0	[0..1]	[249..79]
gi\|38174399, gi\|... - gi\|45360629\|ref\|NP_988987.1\| general transcription factor 2F, polypeptide 2, 30kDa [Xenopus (Siluran...	361.0	[0..2]	[249..3]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAERGELDLT GAKQNTGVWL VKVPKYLSQQ WAKASGRGEV GKLRIAKTQG RTEVSFTLNE  60
   61 DLANIHDIGG KPASVSAPRE HPFVLQSVGG QTLTVFTESS SDKLSLEGIV VQRAECRPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1f3uA
Description:	TFIIF beta subunit, Rap30
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [120-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASENYMRLKR LQIEESSKPV RLSQQLDKVV TTNYKPVANH QYNIEYERKK KEDGKRARAD  60
   61 KQHVLDMLFS AFEKHQYYNL KDLVDITKQP VVYLKEILKE IGVQNVKGIH KNTWELKPEY 120
  121 RHYQGEEKSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.39794
Match:	1bbyA
Description:	DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits