YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|78214698, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Newport
Length:	848 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|78214698, gi|....

Description	E-value	Query Range	Subject Range
gi\|78214680, gi\|... - gi\|78214680\|gb\|ABB36530.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Pullorum],...	1576.0	[0..1]	[848..1]
gi\|78214690, gi\|... - gi\|78214694\|gb\|ABB36537.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Enteritidi...	1575.0	[0..1]	[848..1]
gi\|197364724, gi... - gi\|197364724\|ref\|YP_002144361.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Para... gi\|56130051, gi\|... - gi\|56415794\|ref\|YP_152869.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Paratyph...	1575.0	[0..1]	[848..1]
gi\|78214682, gi\|... - gi\|78214686\|gb\|ABB36533.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Gallinarum... gi\|205354496, gi... - gi\|205354496\|ref\|YP_002228297.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Gall...	1573.0	[0..1]	[848..1]
gi\|62182410, gi\|... - gi\|62182410\|ref\|YP_218827.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar Cholerae...	1573.0	[0..1]	[848..1]
gi\|89110214, gi\|... - gi\|89110214\|ref\|AP_003994.1\| adenylate cyclase [Escherichia coli str. K-12 substr. W3110], gi\|856762... gi\|238902883, gi... - gi\|238902883\|ref\|YP_002928679.1\| adenylate cyclase [Escherichia coli BW2952], gi\|238859933\|gb\|ACR619... gi\|254039018, gi... - gi\|254039018\|ref\|ZP_04873069.1\| adenylate cyclase [Escherichia sp. 1_1_43], gi\|226838709\|gb\|EEH70737... EG10170 - adenylate cyclase / Adenylate cyclase EG10170 - adenylate cyclase / Adenylate cyclase gi\|188495545, gi... - gi\|188495545\|ref\|ZP_03002815.1\| adenylate cyclase, class I [Escherichia coli 53638], gi\|188490744\|gb... CYAA_ECOLI - Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase) (Adenylyl cyclase) - Escherichia coli	1570.0	[0..1]	[848..1]
gi\|170022171, gi... - gi\|170022171\|ref\|YP_001727125.1\| adenylate cyclase [Escherichia coli ATCC 8739], gi\|169757099\|gb\|ACA... gi\|187731691, gi... - gi\|187731691\|ref\|YP_001882499.1\| adenylate cyclase, class I [Shigella boydii CDC 3083-94], gi\|187428... gi\|192926660, gi... - gi\|193065693\|ref\|ZP_03046758.1\| adenylate cyclase, class I [Escherichia coli E22], gi\|192926660\|gb\|E... gi\|192958671, gi... - gi\|193068051\|ref\|ZP_03049016.1\| adenylate cyclase, class I [Escherichia coli E110019], gi\|192958671\|... gi\|168775644, gi... - gi\|187768909\|gb\|EDU32753.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|168780704, gi... - gi\|189001401\|gb\|EDU70387.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|168786643, gi... - gi\|189373311\|gb\|EDU91727.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189376665, gi... - gi\|189376665\|gb\|EDU95081.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|188015428, gi... - gi\|188015428\|gb\|EDU53550.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|168753702, gi... - gi\|189359031\|gb\|EDU77450.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|168763930, gi... - gi\|189365987\|gb\|EDU84403.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|189362577, gi... - gi\|189362577\|gb\|EDU80996.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|15833990, gi\|... - gi\|15833990\|ref\|NP_312763.1\| adenylate cyclase [Escherichia coli O157:H7 str. Sakai], gi\|13364212\|db... gi\|209396473, gi... - gi\|209396473\|ref\|YP_002273322.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4115], ... gi\|209921278, gi... - gi\|209921278\|ref\|YP_002295362.1\| adenylate cyclase [Escherichia coli SE11], gi\|209914537\|dbj\|BAG7961... gi\|74314317, gi\|... - gi\|74314317\|ref\|YP_312736.1\| adenylate cyclase [Shigella sonnei Ss046], gi\|73857794\|gb\|AAZ90501.1\| a... gi\|217324973, gi... - gi\|217324973\|ref\|ZP_03441057.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. TW14588], ... gi\|124530456, gi... - gi\|124530456\|ref\|ZP_01701114.1\| putative adenylate cyclase [Escherichia coli B], gi\|124499222\|gb\|EAY... gi\|81247568, gi\|... - gi\|82546157\|ref\|YP_410104.1\| adenylate cyclase [Shigella boydii Sb227], gi\|81247568\|gb\|ABB68276.1\| a... gi\|218354252, gi... - gi\|218697520\|ref\|YP_002405187.1\| adenylate cyclase [Escherichia coli 55989], gi\|218354252\|emb\|CAV009... gi\|195938094 - gi\|195938094\|ref\|ZP_03083476.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4024] gi\|208728386, gi... - gi\|208808585\|ref\|ZP_03250922.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4206], g... gi\|208812263, gi... - gi\|208812263\|ref\|ZP_03253592.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4045], g... gi\|208740087, gi... - gi\|208819964\|ref\|ZP_03260284.1\| adenylate cyclase, class I [Escherichia coli O157:H7 str. EC4042], g... gi\|209753302, gi... - pir\|\|H91220 adenylate cyclase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952)... gi\|157068959, gi... - gi\|157163279\|ref\|YP_001460597.1\| adenylate cyclase [Escherichia coli HS], gi\|157068959\|gb\|ABV08214.1... gi\|254595202, gi... - gi\|254795802\|ref\|YP_003080639.1\| adenylate cyclase [Escherichia coli O157:H7 str. TW14359], gi\|25459... CYAA_ECO57 - Adenylate cyclase OS=Escherichia coli O157:H7 GN=cyaA PE=3 SV=1	1570.0	[0..1]	[848..1]
gi\|110617054, gi... - gi\|110807506\|ref\|YP_691026.1\| adenylate cyclase [Shigella flexneri 5 str. 8401], gi\|110617054\|gb\|ABF...	1569.0	[0..1]	[848..1]
gi\|581058, gi\|581057 - gi\|581058\|emb\|CAA47280.1\| adenylate cyclase [Escherichia coli], gi\|581057\|emb\|CAA25817.1\| adenylate ...	1568.0	[0..1]	[848..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLYIETLKQ RLDAINQLRV DRALAAMGPA FQQVYSLLPT LLHYHHPLMP GYLDGNVPSG  60
   61 ICFYTPDETQ RHYLNELELY RGMTPQDPPK GELPITGVYT MGSTSSVGQS CSSDLDIWVC 120
  121 HQSWLDGEER QLLQRKCSLL ESWAASLG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [149-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEVSFFLIDE NRFRHNESGS LGGEDCGSTQ HILLLDEFYR TAVRLAGKRI LWSMV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [204-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PCDEEEHYDD YVMTLYAQGV LTPNEWLDLG GLSSLSAEEY FGASLWQLYK SIDSPYKAVL  60
   61 KTLLLEAYSW EYPNPRLLAK DIKQRLHDGE IVSFGLDPYC MMLERVTEYL TAIEDPTRLD 120
  121 LVRRCFYLKV CEKLSRERAC VGWRREVLSQ LVSEWGWDDA RLTMLDNRAN WKIDQVREAH 180
  181 NELLDAMMQS YRNLIRFARR NN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [406-642]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSVSASPQDI GVLTRKLYAA FEALPGKVTL VNPQISPDLS EPNLTFIHVP PGRANRSGWY  60
   61 LYNRAPNMDS IISHQPLEYN RYLNKLVAWA WFNGLLTSRT HLFIKGNGIV DLPKLQEMVA 120
  121 DVSHHFPLRL PAPTPKALYS PCEIRHLAII VNLEYDPTAA FRNKVVHFDF RKLDVFSFGE 180
  181 EQNCLIGSID LLYRNSWNEV RTLHFNGEQA MIEALKTILG KMHQDAAPPD SVEVFCY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [643-848]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQHLRGLIRT RVQQLVSECI ELRLSSTRQE TGRFKALRVS GQTWGLFFER LNVSVQKLEN  60
   61 AIEFYGAISH NKLHGLSVQV ETNQVKLPSV VDGFASEGII QFFFEETGDE KGFNIYILDE 120
  121 SNRAEVYHHC EGSKEELVRD VSRFYSSSHD RFTYGSSFIN FNLPQFYQIV KTDGRAQVIP 180
  181 FRTQPINTVP PANQDHDAPL LQQYFS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits