| Protein: | gi|60655441, gi|... |
| Organism: | synthetic construct |
| Length: | 254 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60655441, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-85 | [1..254] | [1..254] |
|
|
1.0E-82 | [1..254] | [1..254] |
|
|
3.0E-82 | [1..254] | [1..255] |
|
|
5.0E-78 | [1..254] | [1..256] |
|
|
4.0E-77 | [1..254] | [1..257] |
|
|
1.0E-69 | [1..254] | [1..219] |
|
Region A: Residues: [1-74] |
1 11 21 31 41 51
| | | | | |
1 MDNYADLSDT ELTTLLRRYN IPHGPVVGST RRLYEKKIFE YETQRRRLSP PSSSAASSYS 60
61 FSDLNSTRGD ADMY
|
| Detection Method: |  |
| Confidence: | 13.522879 |
| Match: | 1jeiA |
| Description: | Inner nuclear membrane protein emerin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| lamin binding | 4.39382764264433 | bayes_pls_golite062009 |
| binding | 2.48575835933363 | bayes_pls_golite062009 |
| protein binding | 1.25020901551294 | bayes_pls_golite062009 |
|
Region A: Residues: [75-127] |
1 11 21 31 41 51
| | | | | |
1 DLPKKEDALL YQSKGYNDDY YEESYFTTRT YGEPESAGPS RAVRQSVTSF PDA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.433 | a.4.1 | Homeodomain-like |
| View | Download | 0.361 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.400 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.328 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.489 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
|
Region A: Residues: [128-254] |
1 11 21 31 41 51
| | | | | |
1 DAFHHQVHDD DLLSSSEEEC KDRERPMYGR DSAYQSITHY RPVSASRSSL DLSYYPTSSS 60
61 TSFMSSSSSS SSWLTRRAIR PENRAPGAGL GQDRQVPLWG QLLLFLVFVI VLFFIYHFMQ 120
121 AEEGNPF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
