YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61359007, gi\|...
Organism:	synthetic construct
Length:	339 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61359007, gi|....

Description	E-value	Query Range	Subject Range
gi\|61369184, gi\|... - gi\|61369184\|gb\|AAX43297.1\| immunoglobulin [synthetic construct], gi\|30584781\|gb\|AAP36643.1\| Homo sap...	0.0	[1..339]	[1..339]
gi\|51479181 - gi\|51479181\|ref\|NP_032810.2\| immunoglobulin (CD79A) binding protein 1 [Mus musculus]	0.0	[2..339]	[3..340]
gi\|109131099, gi... - gi\|109131099\|ref\|XP_001083303.1\| PREDICTED: immunoglobulin binding protein 1 isoform 2 [Macaca mulat...	0.0	[1..339]	[1..339]
IGBP1_RAT - Immunoglobulin-binding protein 1 OS=Rattus norvegicus GN=Igbp1 PE=2 SV=2	0.0	[16..339]	[17..340]
gi\|55646733 - gi\|55646733\|ref\|XP_523812.1\| PREDICTED: similar to alpha 4 protein [Pan troglodytes]	0.0	[2..339]	[4..340]
gi\|74007551 - gi\|74007551\|ref\|XP_856547.1\| PREDICTED: similar to Immunoglobulin-binding protein 1 (CD79a-binding p...	0.0	[16..339]	[17..340]
gi\|89041671, gi\|... - gi\|89042883\|ref\|XP_944722.1\| PREDICTED: similar to Immunoglobulin-binding protein 1 (CD79a-binding p...	0.0	[2..339]	[4..340]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEDELQLP RLPELFETGR QLLDEVEVAT EPAGSRIVQE KVFKGLDLLE KAAEMLSQLD  60
   61 LFSRNEDLEE IASTDLKYLL VPAFQGALTM KQVNPSKRLD HLQRAREHFI NYLTQCHCYH 120
  121 VAEFELPKTM NNSAENHTAN SSMAYPSLVA MASQRQAKIQ RYKQKKELEH RLSAMKSAVE 180
  181 SGQADDERVR EYYLLHLQRW IDISLEEIES IDQEIKILRE RDSSREASTS NSSRQERPPV 240
  241 KPFILTRNMA QAKVFGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	2v0pA
Description:	No description for 2v0pA was found.

Predicted Domain #2

Region A:
Residues: [258-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYPSLPTMTV SDWYEQHRKY GALPDQGIAK AAPEEFRKAA QQQEEQEEKE EEDDEQTLHR  60
   61 AREWDDWKDT HPRGYGNRQN MG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits