YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56126841, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56126841, gi|....

Description	E-value	Query Range	Subject Range
gi\|23345072 - gi\|23345072\|gb\|AAN17750.1\| putative electron carrier protein ferredoxin [Xenorhabdus nematophila]	4.0E-28	[1..111]	[1..111]
gi\|77974682, gi\|... - gi\|77974682\|ref\|ZP_00830221.1\| COG0633: Ferredoxin [Yersinia frederiksenii ATCC 33641], gi\|238788182...	1.0E-27	[1..111]	[1..111]
gi\|122088368, gi... - gi\|123441407\|ref\|YP_001005394.1\| ferredoxin [Yersinia enterocolitica subsp. enterocolitica 8081], gi... gi\|238714937, gi... - gi\|77958550\|ref\|ZP_00822581.1\| COG0633: Ferredoxin [Yersinia bercovieri ATCC 43970], gi\|238784228\|re... gi\|238750353, gi... - gi\|238750353\|ref\|ZP_04611854.1\| Ferredoxin [Yersinia rohdei ATCC 43380], gi\|238711284\|gb\|EEQ03501.1\|...	2.0E-27	[1..111]	[1..111]
gi\|36786592, gi\|... - gi\|37527158\|ref\|NP_930502.1\| ferredoxin, 2Fe-2S [Photorhabdus luminescens subsp. laumondii TTO1], gi...	2.0E-27	[1..111]	[1..111]
gi\|77977364, gi\|... - gi\|77977364\|ref\|ZP_00832815.1\| COG0633: Ferredoxin [Yersinia intermedia ATCC 29909], gi\|238794842\|re...	2.0E-27	[1..111]	[1..111]
gi\|238796776, gi... - gi\|77963414\|ref\|ZP_00827224.1\| COG0633: Ferredoxin [Yersinia mollaretii ATCC 43969], gi\|238796776\|re...	3.0E-27	[1..111]	[1..111]
gi\|229899044, gi... - gi\|229899044\|ref\|ZP_04514188.1\| [2Fe-2S] ferredoxin [Yersinia pestis biovar Orientalis str. India 19... gi\|149365350, gi... - gi\|149365350\|ref\|ZP_01887385.1\| adrenodoxin family ferredoxin [Yersinia pestis CA88-4125], gi\|149291... gi\|145599508, gi... - gi\|145599508\|ref\|YP_001163584.1\| ferredoxin [Yersinia pestis Pestoides F], gi\|145211204\|gb\|ABP40611.... gi\|166206402, gi... - gi\|166212471\|ref\|ZP_02238506.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Antiqua ... gi\|165992834, gi... - gi\|166008452\|ref\|ZP_02229350.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Antiqua ... gi\|167421297, gi... - gi\|167421297\|ref\|ZP_02313050.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Oriental... gi\|167398828, gi... - gi\|167398828\|ref\|ZP_02304352.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Antiqua ... gi\|167468082 - gi\|167468082\|ref\|ZP_02332786.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis FV-1] Q667Y6\|Q667Y6_YERPS - Adrenodoxin family ferredoxin - Yersinia pseudotuberculosis gi\|167423584, gi... - gi\|167423584\|ref\|ZP_02315337.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Mediaeva... gi\|186699290, gi... - gi\|186896264\|ref\|YP_001873376.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pseudotuberculosis PB... gi\|21958108, gi\|... - gi\|22125239\|ref\|NP_668662.1\| adrenodoxin family ferredoxin [Yersinia pestis KIM], gi\|21958108\|gb\|AAM... gi\|153949773, gi... - gi\|77629890\|ref\|ZP_00792476.1\| COG0633: Ferredoxin [Yersinia pseudotuberculosis IP 31758], gi\|153949... gi\|165937002, gi... - gi\|89102341\|ref\|ZP_01174982.1\| COG0633: Ferredoxin [Yersinia pestis biovar Orientalis str. IP275], g... gi\|25282672 - pir\|\|AC0352 adrenodoxin family ferredoxin [imported] - Yersinia pestis (strain CO92) gi\|108808326, gi... - gi\|108808326\|ref\|YP_652242.1\| ferredoxin [Yersinia pestis Antiqua], gi\|108780239\|gb\|ABG14297.1\| adre... gi\|51590452, gi\|... - gi\|51597170\|ref\|YP_071361.1\| ferredoxin [Yersinia pseudotuberculosis IP 32953], gi\|51590452\|emb\|CAH2... gi\|108811409, gi... - gi\|229901663\|ref\|ZP_04516785.1\| [2Fe-2S] ferredoxin [Yersinia pestis Nepal516], gi\|229681592\|gb\|EEO7... gi\|45437208, gi\|... - gi\|45442344\|ref\|NP_993883.1\| adrenodoxin family ferredoxin [Yersinia pestis biovar Microtus str. 910... gi\|115348561, gi... - gi\|218929950\|ref\|YP_002347825.1\| adrenodoxin family ferredoxin [Yersinia pestis CO92], gi\|16123082\|r... gi\|165928243, gi... - gi\|165928243\|ref\|ZP_02224075.1\| ferredoxin, 2Fe-2S type, ISC system [Yersinia pestis biovar Oriental... gi\|229694841, gi... - gi\|229838475\|ref\|ZP_04458634.1\| [2Fe-2S] ferredoxin [Yersinia pestis biovar Orientalis str. PEXU2], ... gi\|162352066, gi... - gi\|77633387\|ref\|ZP_00795520.1\| COG0633: Ferredoxin [Yersinia pestis Angola], gi\|162419251\|ref\|YP_001... gi\|229895480, gi... - gi\|229895480\|ref\|ZP_04510651.1\| [2Fe-2S] ferredoxin [Yersinia pestis Pestoides A], gi\|229701286\|gb\|E...	3.0E-27	[1..111]	[1..111]
gi\|75515864, gi\|... - gi\|75515864\|ref\|ZP_00737999.1\| COG0633: Ferredoxin [Escherichia coli 53638], gi\|188495583\|ref\|ZP_030... gi\|82777908, gi\|... - gi\|82777908\|ref\|YP_404257.1\| [2FE-2S] ferredoxin, electron carrer protein [Shigella dysenteriae Sd19... gi\|157080869, gi... - gi\|75187277\|ref\|ZP_00700544.1\| COG0633: Ferredoxin [Escherichia coli E24377A], gi\|157158839\|ref\|YP_0...	3.0E-27	[1..111]	[1..111]
gi\|238859729, gi... - gi\|238901690\|ref\|YP_002927486.1\| [2Fe-2S] ferredoxin [Escherichia coli BW2952], gi\|238859729\|gb\|ACR6... gi\|242378125, gi... - gi\|251785852\|ref\|YP_003000156.1\| hypothetical protein B21_02381 [Escherichia coli BL21], gi\|24237812... gi\|253772579, gi... - gi\|254289260\|ref\|YP_003055008.1\| [2Fe-2S] ferredoxin [Escherichia coli BL21(DE3)], gi\|253978567\|gb\|A... gi\|253974400, gi... - gi\|254162499\|ref\|YP_003045607.1\| [2Fe-2S] ferredoxin [Escherichia coli B str. REL606], gi\|253974400\|... EG11328 - [2Fe-2S] ferredoxin / Ferredoxin, an iron-sulfur protein; involved in assembly of other Fe-S cluster... gi\|254794475, gi... - gi\|254794475\|ref\|YP_003079312.1\| [2Fe-2S] ferredoxin [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|13362862, gi\|... - gi\|15832645\|ref\|NP_311418.1\| [2FE-2S] ferredoxin [Escherichia coli O157:H7 str. Sakai], gi\|13362862\|... gi\|110616004, gi... - gi\|110806456\|ref\|YP_689976.1\| [2FE-2S] ferredoxin, electron carrer protein [Shigella flexneri 5 str.... gi\|1799928, gi\|8... - gi\|89109331\|ref\|AP_003111.1\| [2Fe-2S] ferredoxin [Escherichia coli str. K-12 substr. W3110], gi\|1799... gi\|168748411, gi... - gi\|188017109\|gb\|EDU55231.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. EC411... gi\|81246385, gi\|... - gi\|82544974\|ref\|YP_408921.1\| [2FE-2S] ferredoxin, electron carrer protein [Shigella boydii Sb227], g... gi\|189368398, gi... - gi\|189368398\|gb\|EDU86814.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. EC450... gi\|189356612, gi... - gi\|189356612\|gb\|EDU75031.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. EC440... gi\|168773556, gi... - gi\|187770598\|gb\|EDU34442.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. EC419... FER_SHIFL - 2Fe-2S ferredoxin OS=Shigella flexneri GN=fdx PE=3 SV=2 gi\|189362187, gi... - gi\|189362187\|gb\|EDU80606.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. EC448... FER_ECOLI - 2Fe-2S ferredoxin - Escherichia coli gi\|168787876, gi... - gi\|189372348\|gb\|EDU90764.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. EC869... gi\|24052947, gi\|... - gi\|24113854\|ref\|NP_708364.1\| [2FE-2S] ferredoxin, electron carrer protein [Shigella flexneri 2a str.... gi\|189003236, gi... - gi\|189003236\|gb\|EDU72222.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. EC407... gi\|30042171, gi\|... - gi\|30063915\|ref\|NP_838086.1\| [2FE-2S] ferredoxin, electron carrer protein [Shigella flexneri 2a str.... gi\|75196542, gi\|... - gi\|75196542\|ref\|ZP_00706612.1\| COG0633: Ferredoxin [Escherichia coli HS], gi\|157162000\|ref\|YP_001459... FER_ECO57 - 2Fe-2S ferredoxin OS=Escherichia coli O157:H7 GN=fdx PE=3 SV=2 gi\|194427251, gi... - gi\|75211491\|ref\|ZP_00711581.1\| COG0633: Ferredoxin [Escherichia coli B171], gi\|194427251\|ref\|ZP_0305... EG11328 - [2Fe-2S] ferredoxin / Ferredoxin, an iron-sulfur protein; involved in assembly of other Fe-S cluster... gi\|83586825, gi\|... - gi\|83586825\|ref\|ZP_00925456.1\| COG0633: Ferredoxin [Escherichia coli 101-1], gi\|194437629\|ref\|ZP_030... gi\|15803052, gi\|... - gi\|15803052\|ref\|NP_289082.1\| [2FE-2S] ferredoxin, electron carrer protein [Escherichia coli O157:H7 ... gi\|187734044, gi... - gi\|75178131\|ref\|ZP_00698190.1\| COG0633: Ferredoxin [Shigella boydii BS512], gi\|187734044\|ref\|YP_0018... gi\|192929257, gi... - gi\|75257949\|ref\|ZP_00729423.1\| COG0633: Ferredoxin [Escherichia coli E22], gi\|193064022\|ref\|ZP_03045... gi\|74313051, gi\|... - gi\|74313051\|ref\|YP_311470.1\| [2FE-2S] ferredoxin, electron carrer protein [Shigella sonnei Ss046], g... gi\|191167681, gi... - gi\|75229143\|ref\|ZP_00715715.1\| COG0633: Ferredoxin [Escherichia coli B7A], gi\|191167681\|ref\|ZP_03029... gi\|192958349, gi... - gi\|75237729\|ref\|ZP_00721745.1\| COG0633: Ferredoxin [Escherichia coli E110019], gi\|193068397\|ref\|ZP_0... gi\|209920002, gi... - gi\|209920002\|ref\|YP_002294086.1\| ferredoxin [Escherichia coli SE11], gi\|209913261\|dbj\|BAG78335.1\| fe... gi\|209160466, gi... - gi\|209399066\|ref\|YP_002271999.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. ... gi\|218361818, gi... - gi\|218555050\|ref\|YP_002387963.1\| [2Fe-2S] ferredoxin [Escherichia coli IAI1], gi\|218361818\|emb\|CAQ99... gi\|217319856, gi... - gi\|217327489\|ref\|ZP_03443572.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. T... gi\|124531237, gi... - gi\|124531237\|ref\|ZP_01701579.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli B], gi\|1244986... gi\|218371021, gi... - gi\|218701035\|ref\|YP_002408664.1\| [2Fe-2S] ferredoxin [Escherichia coli IAI39], gi\|218371021\|emb\|CAR1... gi\|194432094, gi... - gi\|83570745\|ref\|ZP_00922188.1\| COG0633: Ferredoxin [Shigella dysenteriae 1012], gi\|194432094\|ref\|ZP_... gi\|218352884, gi... - gi\|218696152\|ref\|YP_002403819.1\| [2Fe-2S] ferredoxin [Escherichia coli 55989], gi\|218352884\|emb\|CAU9... gi\|169754120, gi... - gi\|170019192\|ref\|YP_001724146.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli ATCC 8739], g... gi\|168798901, gi... - gi\|189378627\|gb\|EDU97043.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. EC508... gi\|170681073, gi... - gi\|170681073\|ref\|YP_001744713.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli SMS-3-5], gi\|... gi\|169889970, gi... - gi\|170082135\|ref\|YP_001731455.1\| [2Fe-2S] ferredoxin [Escherichia coli str. K-12 substr. DH10B], gi\|... gi\|208725979, gi... - gi\|208806178\|ref\|ZP_03248515.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. E... gi\|195936671 - gi\|195936671\|ref\|ZP_03082053.1\| [2Fe-2S] ferredoxin [Escherichia coli O157:H7 str. EC4024] gi\|208821714, gi... - gi\|208821714\|ref\|ZP_03262034.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. E... gi\|208813259, gi... - gi\|208813259\|ref\|ZP_03254588.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia coli O157:H7 str. E...	4.0E-27	[1..111]	[1..111]
gi\|117624753, gi... - gi\|117624753\|ref\|YP_853666.1\| [2Fe-2S] ferredoxin [Escherichia coli APEC O1], gi\|115513877\|gb\|ABJ019... gi\|218706028, gi... - gi\|218706028\|ref\|YP_002413547.1\| [2Fe-2S] ferredoxin [Escherichia coli UMN026], gi\|218433125\|emb\|CAR... gi\|110344282, gi... - gi\|110642690\|ref\|YP_670420.1\| ferredoxin, 2Fe-2S [Escherichia coli 536], gi\|110344282\|gb\|ABG70519.1\|... gi\|91073426, gi\|... - gi\|91211852\|ref\|YP_541838.1\| ferredoxin, 2Fe-2S [Escherichia coli UTI89], gi\|91073426\|gb\|ABE08307.1\|... gi\|75240450, gi\|... - gi\|75240450\|ref\|ZP_00724384.1\| COG0633: Ferredoxin [Escherichia coli F11], gi\|191172633\|ref\|ZP_03034... gi\|218559451, gi... - gi\|218559451\|ref\|YP_002392364.1\| [2Fe-2S] ferredoxin [Escherichia coli S88], gi\|218366220\|emb\|CAR039... gi\|218690645, gi... - gi\|218690645\|ref\|YP_002398857.1\| [2Fe-2S] ferredoxin [Escherichia coli ED1a], gi\|218428209\|emb\|CAR09... gi\|237705035, gi... - gi\|237705035\|ref\|ZP_04535516.1\| ferredoxin [Escherichia sp. 3_2_53FAA], gi\|226901401\|gb\|EEH87660.1\| ... gi\|170123952, gi... - gi\|170767618\|ref\|ZP_02902071.1\| ferredoxin, 2Fe-2S type, ISC system [Escherichia albertii TW07627], ... gi\|218355579, gi... - gi\|218548038\|ref\|YP_002381829.1\| [2Fe-2S] ferredoxin [Escherichia fergusonii ATCC 35469], gi\|2183555...	9.0E-27	[1..111]	[1..111]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKIVILPHQ DLCPDGAVLE AETGETILDV ALRNGIEIEH ACEKSCACTT CHCIVREGFD  60
   61 SLPESSEEED DMLDKAWGLE PESRLSCQAR VTDDDLVIEI PRYTINHARE H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1i7hA
Description:	Adrenodoxin-like ferredoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits