YRC Public Data Repository - Protein Structure Prediction

Protein:	RS6_YERPG
Organism:	Yersinia pestis Angola
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS6_YERPG.

Description	E-value	Query Range	Subject Range
RS6_SHIFL - 30S ribosomal protein S6 OS=Shigella flexneri GN=rpsF PE=3 SV=1 gi\|209750010, gi... - pir\|\|R3EC6 ribosomal protein S6 [validated] - Escherichia coli (strain K-12), gi\|537041\|gb\|AAA97096... gi\|24054885, gi\|... - gi\|24115554\|ref\|NP_710064.1\| 30S ribosomal protein S6 [Shigella flexneri 2a str. 301], gi\|24054885\|g... RS6_ECOL6 - 30S ribosomal protein S6 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rpsF PE=3... gi\|30065571, gi\|... - gi\|30065571\|ref\|NP_839742.1\| 30S ribosomal protein S6 [Shigella flexneri 2a str. 2457T], gi\|30043835... RS6_ECO57 - 30S ribosomal protein S6 OS=Escherichia coli O157:H7 GN=rpsF PE=3 SV=1 gi\|16132022, gi\|... - gi\|1790644\|gb\|AAC77157.1\| 30S ribosomal subunit protein S6 [Escherichia coli K12], gi\|16132022\|ref\|N... gi\|15804789, gi\|... - gi\|15804789\|ref\|NP_290830.1\| 30S ribosomal protein S6 [Escherichia coli O157:H7 EDL933], gi\|12519191... RS6_ECOK1 - 30S ribosomal protein S6 OS=Escherichia coli O1:K1 / APEC GN=rpsF PE=3 SV=1 RS6_ECODH - 30S ribosomal protein S6 OS=Escherichia coli (strain K12 / DH10B) GN=rpsF PE=3 SV=1 gi\|124500701, gi... - gi\|124528259\|ref\|ZP_01699583.1\| ribosomal protein S6 [Escherichia coli B], gi\|124500701\|gb\|EAY48171.... RS6_ECOSM - 30S ribosomal protein S6 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rpsF PE=3 SV=1 gi\|170766562, gi... - gi\|170766562\|ref\|ZP_02901015.1\| ribosomal protein S6 [Escherichia albertii TW07627], gi\|170124000\|gb... gi\|194434603, gi... - gi\|194434603\|ref\|ZP_03066860.1\| ribosomal protein S6 [Shigella dysenteriae 1012], gi\|194417188\|gb\|ED... gi\|195935990 - gi\|195935990\|ref\|ZP_03081372.1\| 30S ribosomal protein S6 [Escherichia coli O157:H7 str. EC4024] gi\|208729238, gi... - gi\|208809437\|ref\|ZP_03251774.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|208812869, gi... - gi\|208812869\|ref\|ZP_03254198.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208738863, gi... - gi\|208818740\|ref\|ZP_03259060.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|168751448, gi... - gi\|188014482\|gb\|EDU52604.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC4113], gi\|16875144... gi\|189357892, gi... - gi\|189357892\|gb\|EDU76311.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC4401], gi\|16875477... gi\|168760443, gi... - gi\|189368955\|gb\|EDU87371.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC4501], gi\|16876044... gi\|168766480, gi... - gi\|189363927\|gb\|EDU82346.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC4486], gi\|16876648... gi\|187770274, gi... - gi\|187770274\|gb\|EDU34118.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC4196], gi\|16877408... gi\|168780633, gi... - gi\|189001825\|gb\|EDU70811.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC4076], gi\|16878063... gi\|168784838, gi... - gi\|189375098\|gb\|EDU93514.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC869], gi\|168784838... gi\|168801856, gi... - gi\|189376062\|gb\|EDU94478.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. EC508], gi\|168801856... RS6_ECO55 - 30S ribosomal protein S6 OS=Escherichia coli (strain 55989 / EAEC) GN=rpsF PE=3 SV=1 RS6_ECO7I - 30S ribosomal protein S6 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rpsF PE=3 SV=1 gi\|296044035\|ref... - 30S ribosomal subunit protein S6 [Escherichia coli], 30S ribosomal subunit protein S6 [Escherichia c... gi\|75242410, gi\|... - gi\|75242410\|ref\|ZP_00726172.1\| COG0360: Ribosomal protein S6 [Escherichia coli F11], gi\|191170756\|re... RS6_ECO5E - 30S ribosomal protein S6 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rpsF PE=3 SV=1 gi\|192926347, gi... - gi\|75255927\|ref\|ZP_00727659.1\| COG0360: Ribosomal protein S6 [Escherichia coli E22], gi\|193066024\|re... RS6_ECOSE - 30S ribosomal protein S6 OS=Escherichia coli (strain SE11) GN=rpsF PE=3 SV=1 gi\|191165624, gi... - gi\|75231207\|ref\|ZP_00717614.1\| COG0360: Ribosomal protein S6 [Escherichia coli B7A], gi\|191165624\|re... RS6_ECO27 - 30S ribosomal protein S6 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rpsF PE=3 SV=1 gi\|193070872, gi... - gi\|75234251\|ref\|ZP_00718639.1\| COG0360: Ribosomal protein S6 [Escherichia coli E110019], gi\|19307087... gi\|217320686, gi... - gi\|217324465\|ref\|ZP_03440549.1\| ribosomal protein S6 [Escherichia coli O157:H7 str. TW14588], gi\|217... RS6_SHIBS - 30S ribosomal protein S6 OS=Shigella boydii serotype 4 (strain Sb227) GN=rpsF PE=3 SV=1 RS6_ESCF3 - 30S ribosomal protein S6 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=... gi\|89110920, gi\|... - gi\|89110920\|ref\|AP_004700.1\| 30S ribosomal subunit protein S6 [Escherichia coli str. K-12 substr. W3... RS6_ECO8A - 30S ribosomal protein S6 OS=Escherichia coli O8 (strain IAI1) GN=rpsF PE=3 SV=1 RS6_SHISS - 30S ribosomal protein S6 OS=Shigella sonnei (strain Ss046) GN=rpsF PE=3 SV=1 RS6_ECO45 - 30S ribosomal protein S6 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rpsF PE=3 SV=1 RS6_SHIDS - 30S ribosomal protein S6 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rpsF PE=3 SV=1 RS6_ECO81 - 30S ribosomal protein S6 OS=Escherichia coli O81 (strain ED1a) GN=rpsF PE=3 SV=1 RS6_ECOHS - 30S ribosomal protein S6 OS=Escherichia coli O9:H4 (strain HS) GN=rpsF PE=3 SV=1 gi\|194415285, gi... - gi\|75212248\|ref\|ZP_00712288.1\| COG0360: Ribosomal protein S6 [Escherichia coli B171], gi\|194426546\|r... RS6_SHIB3 - 30S ribosomal protein S6 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rpsF PE=3 SV... RS6_ECO24 - 30S ribosomal protein S6 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rpsF PE=3 SV=1 sp\|B7UQK9\|RS6_ECO27 - 30S ribosomal protein S6 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rpsF PE=3 SV=1 RS6_ECOUT - 30S ribosomal protein S6 OS=Escherichia coli (strain UTI89 / UPEC) GN=rpsF PE=3 SV=1 gi\|15834430, gi\|... - gi\|15834430\|ref\|NP_313203.1\| 30S ribosomal protein S6 [Escherichia coli O157:H7 str. Sakai], gi\|1336... RS6_ECOL6 - 30S ribosomal protein S6 OS=Escherichia coli O6 GN=rpsF PE=3 SV=1 RS6_ECOLC - 30S ribosomal protein S6 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rpsF PE=3 SV=... gi\|254595619, gi... - gi\|254796219\|ref\|YP_003081056.1\| 30S ribosomal subunit protein S6 [Escherichia coli O157:H7 str. TW1... RS6_SHIF8 - 30S ribosomal protein S6 OS=Shigella flexneri serotype 5b (strain 8401) GN=rpsF PE=3 SV=1 gi\|254037220, gi... - gi\|254037220\|ref\|ZP_04871297.1\| 30S ribosomal subunit protein S6 [Escherichia sp. 1_1_43], gi\|226840... RS6_ECOBW - 30S ribosomal protein S6 OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rpsF PE=3 SV=1 gi\|226901780, gi... - gi\|237703868\|ref\|ZP_04534349.1\| ribosomal protein S6 [Escherichia sp. 3_2_53FAA], gi\|226901780\|gb\|EE... gi\|227886756, gi... - gi\|227886756\|ref\|ZP_04004561.1\| ribosomal protein S6 [Escherichia coli 83972], gi\|227836329\|gb\|EEJ46...	3.0E-40	[1..130]	[1..131]
gi\|205348027, gi... - gi\|205348027\|gb\|EDZ34658.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Hadar ... gi\|195632912, gi... - gi\|195632912\|gb\|EDX51366.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Newpor... gi\|238910548 - gi\|238910548\|ref\|ZP_04654385.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... RS6_SALCH - 30S ribosomal protein S6 OS=Salmonella choleraesuis GN=rpsF PE=3 SV=1 RS6_SALPA - 30S ribosomal protein S6 OS=Salmonella paratyphi A GN=rpsF PE=3 SV=1 lcl\|NC_016856.1_... - [gene=rpsF] [protein=30S ribosomal protein S6] [protein_id=YP_005240706.1] [location=4643344..464373... gi\|213161637 - gi\|213161637\|ref\|ZP_03347347.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... gi\|213428643 - gi\|213428643\|ref\|ZP_03361393.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... gi\|213609730 - gi\|213609730\|ref\|ZP_03369556.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... gi\|213648999 - gi\|213648999\|ref\|ZP_03379052.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... gi\|204323394, gi... - gi\|204926729\|ref\|ZP_03217931.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Ja... RS6_SALG2 - 30S ribosomal protein S6 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rpsF PE=3 SV=1 RS6_SALEP - 30S ribosomal protein S6 OS=Salmonella enteritidis PT4 (strain P125109) GN=rpsF PE=3 SV=1 RS6_SALCH - 30S ribosomal protein S6 OS=Salmonella choleraesuis (strain SC-B67) GN=rpsF PE=3 SV=1 gi\|213028574 - gi\|213028574\|ref\|ZP_03343021.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... RS6_SALTY - 30S ribosomal protein S6 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rpsF PE=... RS6_SALA4 - 30S ribosomal protein S6 OS=Salmonella agona (strain SL483) GN=rpsF PE=3 SV=1 RS6_SALTI - 30S ribosomal protein S6 OS=Salmonella typhi GN=rpsF PE=3 SV=1 gi\|197240584, gi... - gi\|197262329\|ref\|ZP_03162403.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Sa... gi\|16763208 - gi\|16763208\|ref\|NP_458825.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serovar T... RS6_SALPK - 30S ribosomal protein S6 OS=Salmonella paratyphi A (strain AKU_12601) GN=rpsF PE=3 SV=1 gi\|29144687, gi\|... - gi\|29144687\|ref\|NP_808029.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serovar T... gi\|200389133, gi... - gi\|200389133\|ref\|ZP_03215745.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Vi... RS6_SALNS - 30S ribosomal protein S6 OS=Salmonella newport (strain SL254) GN=rpsF PE=3 SV=1 RS6_SALHS - 30S ribosomal protein S6 OS=Salmonella heidelberg (strain SL476) GN=rpsF PE=3 SV=1 RS6_SALPB - 30S ribosomal protein S6 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsF PE=3 SV=1 RS6_SALTI - 30S ribosomal protein S6 OS=Salmonella typhi GN=rpsF PE=3 SV=1 gi\|194457460, gi... - gi\|194471096\|ref\|ZP_03077080.1\| ribosomal protein S6 [Salmonella enterica subsp. enterica serovar Ke... RS6_SALTY - 30S ribosomal protein S6 OS=Salmonella typhimurium GN=rpsF PE=3 SV=1 RS6_SALSV - 30S ribosomal protein S6 OS=Salmonella schwarzengrund (strain CVM19633) GN=rpsF PE=3 SV=1 RS6_SALPA - 30S ribosomal protein S6 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rpsF PE=3 SV=1 RS6_CROS8 - 30S ribosomal protein S6 OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=rpsF PE=3 SV=1 gi\|213864945 - gi\|213864945\|ref\|ZP_03387064.1\| 30S ribosomal protein S6 [Salmonella enterica subsp. enterica serova... RS6_SALPC - 30S ribosomal protein S6 OS=Salmonella paratyphi C (strain RKS4594) GN=rpsF PE=3 SV=1 gi\|283786874\|ref... - 30S ribosomal subunit protein S6 [Citrobacter rodentium ICC168] RS6_SALCH - 30S ribosomal protein S6 OS=Salmonella choleraesuis GN=rpsF PE=3 SV=1 RS6_SALTY - 30S ribosomal protein S6 OS=Salmonella typhimurium GN=rpsF PE=3 SV=1 RS6_SALPB - 30S ribosomal protein S6 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsF PE=3 SV=1	3.0E-40	[1..130]	[1..131]
RS6_PECAS - 30S ribosomal protein S6 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rpsF PE... RS6_ERWCT - 30S ribosomal protein S6 OS=Erwinia carotovora subsp. atroseptica GN=rpsF PE=3 SV=1	3.0E-40	[1..130]	[1..130]
gi\|242379721, gi... - gi\|251787448\|ref\|YP_003001752.1\| hypothetical protein B21_04029 [Escherichia coli BL21], gi\|24237972... gi\|254164129, gi... - gi\|254164129\|ref\|YP_003047237.1\| 30S ribosomal protein S6 [Escherichia coli B str. REL606], gi\|25397... gi\|253980186, gi... - gi\|254290879\|ref\|YP_003056627.1\| 30S ribosomal protein S6 [Escherichia coli BL21(DE3)], gi\|253980186... gi\|75515437, gi\|... - gi\|75515437\|ref\|ZP_00737594.1\| COG0360: Ribosomal protein S6 [Escherichia coli 53638], gi\|188495956\|... gi\|194421548, gi... - gi\|83585062\|ref\|ZP_00923715.1\| COG0360: Ribosomal protein S6 [Escherichia coli 101-1], gi\|194439549\|...	4.0E-40	[1..130]	[1..131]
EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts RS6_ECOLI - 30S ribosomal protein S6 [Contains: 30S ribosomal protein S6, fully modified isoform; 30S ribosomal ... EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts	7.0E-40	[1..128]	[1..129]
gi\|33566505 - gi\|33566505\|emb\|CAE37761.1\| 30s ribosomal protein s6 [Bordetella parapertussis] gi\|33597054 - gi\|33597054\|ref\|NP_884697.1\| 30S ribosomal protein S6 [Bordetella parapertussis 12822] gi\|33568499, gi\|... - gi\|33600899\|ref\|NP_888459.1\| 30S ribosomal protein S6 [Bordetella bronchiseptica RB50], gi\|33568499\|...	2.0E-39	[1..108]	[32..139]
RS6_SODGM - 30S ribosomal protein S6 OS=Sodalis glossinidius (strain morsitans) GN=rpsF PE=3 SV=1	2.0E-39	[1..130]	[1..131]
gi\|54778759 - gi\|54778759\|gb\|AAV39593.1\| ribosomal protein S6 [synthetic construct]	2.0E-39	[2..130]	[26..155]
RS6_PHOLL - 30S ribosomal protein S6 OS=Photorhabdus luminescens subsp. laumondii GN=rpsF PE=3 SV=1 RS6_PHOLL - 30S ribosomal protein S6 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565...	4.0E-39	[1..130]	[1..131]
RS6_BURXL - 30S ribosomal protein S6 OS=Burkholderia xenovorans (strain LB400) GN=rpsF PE=3 SV=1 RS6_BURPP - 30S ribosomal protein S6 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsF PE=3 SV=1 gi\|170692292, gi... - gi\|170692292\|ref\|ZP_02883455.1\| ribosomal protein S6 [Burkholderia graminis C4D1M], gi\|170142722\|gb\|...	6.0E-39	[1..123]	[1..123]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEIVFMV HPDQSEQVPG MIERYSATIT NAAGTIHRLE DWGRRQLAYP INKLHKAHYV  60
   61 LLNVEAPQEA IDELETNFRF NDAVIRSMVM RVKHAVTEAS PMVKAKDERR ERHDFASEAN 120
  121 DDSEAGDSEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.72663177460478	bayes_pls_golite062009
structural molecule activity	9.15324307340032	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: