YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|152959454, gi...
Organism:	Yersinia pseudotuberculosis IP 31758
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|152959454, gi....

Description	E-value	Query Range	Subject Range
OMPA_SALTY - Outer membrane protein A OS=Salmonella typhimurium GN=ompA PE=3 SV=2 OMPA_SALTY - Outer membrane protein A OS=Salmonella typhimurium GN=ompA PE=3 SV=2 OMPA_SALTY - Outer membrane protein A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ompA PE=... gi\|205352225, gi... - gi\|205352225\|ref\|YP_002226026.1\| outer membrane protein A [Salmonella enterica subsp. enterica serov... gi\|206708218, gi... - gi\|207856415\|ref\|YP_002243066.1\| outer membrane protein A [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=ompA] [protein=outer membrane protein A] [protein_id=YP_005236803.1] [location=complement(1119...	1.0E-36	[1..174]	[1..195]
gi\|56413933, gi\|... - gi\|56413933\|ref\|YP_151008.1\| outer membrane protein A [Salmonella enterica subsp. enterica serovar P... gi\|197362856, gi... - gi\|197362856\|ref\|YP_002142493.1\| outer membrane protein A [Salmonella enterica subsp. enterica serov...	1.0E-36	[1..174]	[1..195]
gi\|72587, gi\|758341 - gi\|758341\|emb\|CAA26037.1\| outer membrane protein (ompA) [Salmonella typhimurium], pir\|\|MMEBAT outer ... gi\|758341\|emb\|CA... - outer membrane protein (ompA) [Salmonella typhimurium]	1.0E-36	[1..174]	[1..195]
gi\|62127225, gi\|... - gi\|62179592\|ref\|YP_216009.1\| outer membrane protein A [Salmonella enterica subsp. enterica serovar C...	1.0E-36	[1..174]	[1..195]
gi\|29137907, gi\|... - gi\|29142277\|ref\|NP_805619.1\| outer membrane protein A [Salmonella enterica subsp. enterica serovar T... gi\|16759951 - gi\|16759951\|ref\|NP_455568.1\| outer membrane protein A [Salmonella enterica subsp. enterica serovar T... OMPA_SALTI - Outer membrane protein A OS=Salmonella typhi GN=ompA PE=3 SV=1 OMPA_SALTI - Outer membrane protein A OS=Salmonella typhi GN=ompA PE=3 SV=1	4.0E-36	[1..174]	[1..195]
gi\|26107378, gi\|... - gi\|26246978\|ref\|NP_753018.1\| outer membrane protein A [Escherichia coli CFT073], gi\|26107378\|gb\|AAN7...	4.0E-36	[1..174]	[30..224]
OMPA_SHIDY - Outer membrane protein A OS=Shigella dysenteriae GN=ompA PE=3 SV=1	1.0E-35	[1..174]	[1..196]
gi\|237707059, gi... - gi\|237707059\|ref\|ZP_04537540.1\| outer membrane protein A [Escherichia sp. 3_2_53FAA], gi\|226898269\|g... gi\|91210052, gi\|... - gi\|91210052\|ref\|YP_540038.1\| outer membrane protein A [Escherichia coli UTI89], gi\|91071626\|gb\|ABE06...	2.0E-35	[1..174]	[30..220]
gi\|51235576 - gi\|51235576\|gb\|AAT98589.1\| outer membrane protein A [Escherichia coli] gi\|157159269, gi... - gi\|75190025\|ref\|ZP_00703292.1\| COG2885: Outer membrane protein and related peptidoglycan-associated ...	3.0E-35	[1..174]	[1..195]
gi\|117623167, gi... - gi\|117623167\|ref\|YP_852080.1\| outer membrane protein A [Escherichia coli APEC O1], gi\|115512291\|gb\|A...	4.0E-35	[1..174]	[25..215]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIACLSAV AACVLAVTAG SAFAGQSTVS GGYAQSDYQG VANKSSGFNL KYRYEWSDSQ  60
   61 LGYITSFTHT EKSGFGDEAV YNKAQYNAIT GGPAYRINDW ASIYGLVGVG HGRFTQNESA 120
  121 FVGDKHSTSD YGFTYGAGLQ FNPAENVALD VSYEQSRIRN VDVGTWVAGV GYTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1ormA
Description:	Outer membrane protein X (OMPX)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits