YRC Public Data Repository - Protein Structure Prediction

Protein:	PLSB_SHIDS
Organism:	Shigella dysenteriae Sd197
Length:	827 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLSB_SHIDS.

Description	E-value	Query Range	Subject Range
PLSB_SHISS - Glycerol-3-phosphate acyltransferase OS=Shigella sonnei (strain Ss046) GN=plsB PE=3 SV=1	961.0	[0..1]	[827..1]
PLSB_SHIBS - Glycerol-3-phosphate acyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=plsB PE=3 SV=1	961.0	[0..1]	[827..1]
gi\|30042890, gi\|... - gi\|30064631\|ref\|NP_838802.1\| glycerol-3-phosphate acyltransferase [Shigella flexneri 2a str. 2457T],... PLSB_SHIFL - Glycerol-3-phosphate acyltransferase OS=Shigella flexneri GN=plsB PE=3 SV=1 gi\|56480529, gi\|... - gi\|56480529\|ref\|NP_709879.2\| glycerol-3-phosphate acyltransferase [Shigella flexneri 2a str. 301], g... PLSB_SHIF8 - Glycerol-3-phosphate acyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=plsB PE=3 SV=...	961.0	[0..1]	[827..1]
gi\|187775961, gi... - gi\|187775961\|ref\|ZP_02799387.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|188025073, gi... - gi\|188025073\|ref\|ZP_02997346.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|13364501, gi\|... - gi\|15834278\|ref\|NP_313051.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7], gi\|133... gi\|189405644, gi... - gi\|189405644\|ref\|ZP_03007892.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|208735238, gi... - gi\|208813961\|ref\|ZP_03255290.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|208819184, gi... - gi\|208819184\|ref\|ZP_03259504.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|209751342, gi... - gi\|25286478\|pir\|\|H91256 glycerol-3-phosphate acyltransferase [imported] - Escherichia coli (strain O... gi\|217320852, gi... - gi\|217324631\|ref\|ZP_03440715.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|189010222, gi... - gi\|189010222\|ref\|ZP_02805442.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|189357445, gi... - gi\|189402121\|ref\|ZP_02780200.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|189364052, gi... - gi\|189402807\|ref\|ZP_02791290.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|13364501, gi\|... - gi\|15834278\|ref\|NP_313051.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. Sak... gi\|189403931, gi... - gi\|189403931\|ref\|ZP_02785895.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ...	960.0	[0..1]	[827..1]
gi\|15804634, gi\|... - gi\|15804634\|ref\|NP_290675.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 EDL933],... gi\|25286479 - gi\|25286479\|pir\|\|D86097 glycerol-3-phosphate acyltransferase [imported] - Escherichia coli (strain O...	958.0	[0..1]	[827..1]
gi\|396376 - gi\|396376\|gb\|AAC43135.1\| glycerol-3-phosphate acyltransferase [Escherichia coli str. K-12 substr. MG... gi\|396376\|gb\|AAC... - glycerol-3-phosphate acyltransferase [Escherichia coli]	955.0	[0..1]	[827..1]
gi\|188494860, gi... - gi\|75514802\|ref\|ZP_00737031.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli 536... PLSB_ECOLU - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=plsB... gi\|85676793, gi\|... - gi\|89110762\|ref\|AP_004542.1\| glycerol-3-phosphate O-acyltransferase [Escherichia coli str. K-12 subs... PLSB_ECO7I - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=plsB PE=3 S... gi\|75241071 - gi\|75241071\|ref\|ZP_00724945.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli F11... gi\|75258961 - gi\|75258961\|ref\|ZP_00730329.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli E22... gi\|83587134 - gi\|83587134\|ref\|ZP_00925763.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli 101... PLSB_ECODH - Glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=plsB PE=3 SV=1 PLSB_ECO24 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=plsB PE... gi\|162138314 - gi\|162138314\|ref\|YP_543550.2\| glycerol-3-phosphate acyltransferase [Escherichia coli UTI89] PLSB_ECO27 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=plsB PE... gi\|194432310, gi... - gi\|194432310\|ref\|ZP_03064598.1\| glycerol-3-phosphate acyltransferase [Shigella dysenteriae 1012], gi... gi\|75229392 - gi\|75229392\|ref\|ZP_00715944.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli B7A... PLSB_ECO45 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=plsB PE=3 SV... gi\|193067917, gi... - gi\|75238579\|ref\|ZP_00722568.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli E11... PLSB_ECO8A - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O8 (strain IAI1) GN=plsB PE=3 SV=1 PLSB_ECOHS - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=plsB PE=3 SV=1 PLSB_ECO55 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=plsB PE=3 SV=1 gi\|75211924 - gi\|75211924\|ref\|ZP_00711979.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Escherichia coli B17... PLSB_ECO81 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O81 (strain ED1a) GN=plsB PE=3 SV=1 gi\|227886953, gi... - gi\|227886953\|ref\|ZP_04004758.1\| glycerol-3-phosphate acyltransferase [Escherichia coli 83972], gi\|22... PLSB_ECOBW - Glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=plsB PE=3... gi\|253326375, gi... - gi\|254290727\|ref\|YP_003056475.1\| glycerol-3-phosphate acyltransferase [Escherichia coli BL21(DE3)], ... gi\|254163977, gi... - gi\|254163977\|ref\|YP_003047085.1\| glycerol-3-phosphate acyltransferase [Escherichia coli B str. REL60... sp\|B7UPK2\|PLSB_ECO27 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=plsB PE... EG10740 - glycerol-3-phosphate O-acyltransferase / Glycerol-3-phosphate acyltransferase PLSB_ECOLI - Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT) - Escherichia coli PLSB_ECOL6 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O6 GN=plsB PE=3 SV=2 PLSB_ECOLC - Glycerol-3-phosphate acyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=p... EG10740 - glycerol-3-phosphate O-acyltransferase / Glycerol-3-phosphate acyltransferase gi\|161949979 - gi\|161949979\|ref\|YP_405898.2\| glycerol-3-phosphate acyltransferase [Shigella dysenteriae Sd197] PLSB_ECOL6 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ...	916.0	[0..21]	[827..1]
PLSB_ECO5E - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=plsB PE=3... gi\|162139732 - gi\|162139732\|ref\|NP_313051.2\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. Sa... gi\|189375105, gi... - gi\|189375105\|gb\|EDU93521.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. EC86... gi\|254796043, gi... - gi\|254796043\|ref\|YP_003080880.1\| glycerol-3-phosphate O-acyltransferase [Escherichia coli O157:H7 st... gi\|195935808 - gi\|195935808\|ref\|ZP_03081190.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... gi\|208806119, gi... - gi\|208806119\|ref\|ZP_03248456.1\| glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7 str. ... PLSB_ECO57 - Glycerol-3-phosphate acyltransferase OS=Escherichia coli O157:H7 GN=plsB PE=3 SV=2	914.0	[0..21]	[827..1]
PLSB_SHIB3 - Glycerol-3-phosphate acyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=...	913.0	[0..21]	[827..1]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFCYPCRAF ALLTRGFTSF MSGWPRIYYK LLNLPLSILV KSKSIPADPA PELGLDTSRP  60
   61 IMYVLPYNSK ADLLTLRAQC LAHDLPDPLE PLEIDGTLLP RYVFIHGGPR VFTYYTPKEE 120
  121 SIKLFHDYLD LHRSNPNLDV QMVPVSVMFG RAPGREKGEV NPPLRMLNGV QKFFAVLWLG 180
  181 RDSFVRFSPS VSLRRMADEH GTDKTIAQKL ARVARMHFAR QRLAAVGP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [229-533]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLPARQDLFN KLLASRAIAK AVEDEARSKK ISHEKAQQNA IALMEEIAAN FSYEMIRLTD  60
   61 RILGFTWNRL YQGINVHNAE RVRQLAHDGH ELVYVPCHRS HMDYLLLSYV LYHQGLVPPH 120
  121 IAAGINLNFW PAGPIFRRLG AFFIRRTFKG NKLYSTVFRE YLGELFSRGY SVEYFVEGGR 180
  181 SRTGRLLDPK TGTLSMTIQA MLRGGTRPIT LIPIYIGYEH VMEVGTYAKE LRGATKEKES 240
  241 LPQMLRGLSK LRNLGQGYVN FGEPMPLMTY LNQHVPDWRE SIDPIEAVRP AWLTPTVNNI 300
  301 AADLM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	2q66A
Description:	No description for 2q66A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.122769147009	bayes_pls_golite062009
nucleotidyltransferase activity	0.78517703623017	bayes_pls_golite062009
transferase activity	0.63270331673446	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.507997793947779	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [534-703]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRINNAGAAN AMNLCCTALL ASRQRSLTRE QLTEQLNCYL DLMRNVPYST DSTVPSASAS  60
   61 ELIDHALQMN KFEVEKDTIG DIIILPREQA VLMTYYRNNI AHMLVLPSLM AAIVTQHRHI 120
  121 SRDVLMEHVN VLYPMLKAEL FLRWDRDELP DVIDALANEM QRQGLITLQD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [704-827]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DELHINPAHS RTLQLLAAGA RETLQRYAIT FWLLSANPSI NRGTLEKESR TVAQRLSVLH  60
   61 GINAPEFFDK AVFSSLVLTL RDEGYISDSG DAEPAETMKV YQLLAELITS DVRLTIESAT 120
  121 QGEG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.672	0.026	transferase activity	b.34.9	Tudor/PWWP/MBT
View	Download	0.613	0.007	acyltransferase activity	a.64.1	Saposin
View	Download	0.599	0.007	acyltransferase activity	a.56.1	CO dehydrogenase ISP C-domain like
View	Download	0.587	0.005	acyltransferase activity	a.42.1	MDM2
View	Download	0.589	N/A	N/A	a.64.1	Saposin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: