YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|62179659, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|62179659, gi|....

Description	E-value	Query Range	Subject Range
gi\|110342807, gi... - gi\|110641215\|ref\|YP_668945.1\| curli assembly protein CsgE [Escherichia coli 536], gi\|110342807\|gb\|AB... EG13411 - curlin secretion specificity factor / Curlin secretion specificity factor; blocks CsgA amyloid forma... gi\|192927835, gi... - gi\|75257478\|ref\|ZP_00728981.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|188490603, gi... - gi\|75513485\|ref\|ZP_00735889.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|193069494, gi... - gi\|75235961\|ref\|ZP_00720098.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|191172386, gi... - gi\|75240638\|ref\|ZP_00724555.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|188018124, gi... - gi\|188018124\|gb\|EDU56246.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|73855068, gi\|... - gi\|74311591\|ref\|YP_310010.1\| curli assembly protein CsgE [Shigella sonnei Ss046], gi\|73855068\|gb\|AAZ... gi\|168754515, gi... - gi\|189358340\|gb\|EDU76759.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|168760624, gi... - gi\|189368803\|gb\|EDU87219.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|157078391, gi... - gi\|75190100\|ref\|ZP_00703367.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|75210315, gi\|... - gi\|75210315\|ref\|ZP_00710477.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Escherichia col... gi\|253324980, gi... - gi\|254287954\|ref\|YP_003053702.1\| predicted transport protein [Escherichia coli BL21(DE3)], gi\|253977... gi\|251784572, gi... - gi\|251784572\|ref\|YP_002998876.1\| hypothetical protein B21_01043 [Escherichia coli BL21], gi\|24237684... gi\|238862091, gi... - gi\|238900294\|ref\|YP_002926090.1\| putative transport protein [Escherichia coli BW2952], gi\|238862091\|... gi\|237706980, gi... - gi\|237706980\|ref\|ZP_04537461.1\| curli production assembly/transport subunit CsgE [Escherichia sp. 3_... gi\|227886607, gi... - gi\|227886607\|ref\|ZP_04004412.1\| curli assembly protein CsgE [Escherichia coli 83972], gi\|227836811\|g... CSGE_ECOL6 - Curli production assembly/transport component CsgE OS=Escherichia coli O6 GN=csgE PE=3 SV=1 CSGE_ECOLI - Curli production assembly/transport component csgE precursor - Escherichia coli gi\|4062603, gi\|8... - gi\|89107884\|ref\|AP_001664.1\| predicted transport protein [Escherichia coli str. K-12 substr. W3110],... CSGE_ECOL6 - Curli production assembly/transport component CsgE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7... gi\|91210187, gi\|... - gi\|91210187\|ref\|YP_540173.1\| curli assembly protein CsgE [Escherichia coli UTI89], gi\|91071761\|gb\|AB... gi\|13360876, gi\|... - gi\|15830670\|ref\|NP_309443.1\| curli assembly protein CsgE [Escherichia coli O157:H7 str. Sakai], gi\|1... EG13411 - curlin secretion specificity factor / Curlin secretion specificity factor; blocks CsgA amyloid forma... CSGE_ECO57 - Curli production assembly/transport component CsgE OS=Escherichia coli O157:H7 GN=csgE PE=3 SV=1 gi\|15801156, gi\|... - gi\|15801156\|ref\|NP_287173.1\| curli assembly protein CsgE [Escherichia coli O157:H7 EDL933], gi\|12514... gi\|157160561, gi... - gi\|157160561\|ref\|YP_001457879.1\| curli assembly protein CsgE [Escherichia coli HS], gi\|157066241\|gb\|... gi\|115512352, gi... - gi\|117623228\|ref\|YP_852141.1\| curli assembly protein CsgE [Escherichia coli APEC O1], gi\|115512352\|g... gi\|124531169, gi... - gi\|124531169\|ref\|ZP_01701524.1\| curli production assembly/transport component, 2nd curli operon [Esc... gi\|254792422, gi... - gi\|254792422\|ref\|YP_003077259.1\| predicted transport protein [Escherichia coli O157:H7 str. TW14359]... gi\|253973047, gi... - gi\|254161146\|ref\|YP_003044254.1\| predicted transport protein [Escherichia coli B str. REL606], gi\|25... gi\|194438017, gi... - gi\|194438017\|ref\|ZP_03070110.1\| curli production assembly/transport subunit CsgE [Escherichia coli 1... gi\|195935426 - gi\|195935426\|ref\|ZP_03080808.1\| curli assembly protein CsgE [Escherichia coli O157:H7 str. EC4024] gi\|208809183, gi... - gi\|208809183\|ref\|ZP_03251520.1\| curli production assembly/transport subunit CsgE [Escherichia coli O... gi\|208816411, gi... - gi\|208816411\|ref\|ZP_03257590.1\| curli production assembly/transport subunit CsgE [Escherichia coli O... gi\|208737721, gi... - gi\|208822236\|ref\|ZP_03262555.1\| curli production assembly/transport subunit CsgE [Escherichia coli O... gi\|209161230, gi... - gi\|209399830\|ref\|YP_002269886.1\| curli production assembly/transport subunit CsgE [Escherichia coli ... gi\|209911551, gi... - gi\|209918292\|ref\|YP_002292376.1\| curli assembly protein CsgE [Escherichia coli SE11], gi\|209911551\|d... gi\|215264320, gi... - gi\|215486248\|ref\|YP_002328679.1\| curli assembly protein CsgE [Escherichia coli O127:H6 str. E2348/69... gi\|189363096, gi... - gi\|189363096\|gb\|EDU81515.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|187770401, gi... - gi\|187770401\|gb\|EDU34245.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|188999068, gi... - gi\|188999068\|gb\|EDU68054.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|168799313, gi... - gi\|189378313\|gb\|EDU96729.1\| curli production assembly/transport subunit CsgE [Escherichia coli O157:... gi\|169755492, gi... - gi\|170020564\|ref\|YP_001725518.1\| curli assembly protein CsgE [Escherichia coli ATCC 8739], gi\|169755... gi\|170080691, gi... - gi\|170080691\|ref\|YP_001730011.1\| transport protein [Escherichia coli str. K-12 substr. DH10B], gi\|16... gi\|170681334, gi... - gi\|170681334\|ref\|YP_001744146.1\| curli production assembly/transport subunit CsgE [Escherichia coli ... gi\|190903024, gi... - gi\|191166912\|ref\|ZP_03028736.1\| curli production assembly/transport subunit CsgE [Escherichia coli B... gi\|217318591, gi... - gi\|217328164\|ref\|ZP_03444246.1\| curli production assembly/transport subunit CsgE [Escherichia coli O... gi\|218360385, gi... - gi\|218553617\|ref\|YP_002386530.1\| curli assembly protein CsgE [Escherichia coli IAI1], gi\|218360385\|e... gi\|218364689, gi... - gi\|218557920\|ref\|YP_002390833.1\| curli assembly protein CsgE [Escherichia coli S88], gi\|218364689\|em... gi\|218688992, gi... - gi\|218688992\|ref\|YP_002397204.1\| curli assembly protein CsgE [Escherichia coli ED1a], gi\|218426556\|e... gi\|218694574, gi... - gi\|218694574\|ref\|YP_002402241.1\| curli assembly protein CsgE [Escherichia coli 55989], gi\|218351306\|... gi\|218370444, gi... - gi\|218700458\|ref\|YP_002408087.1\| curli assembly protein CsgE [Escherichia coli IAI39], gi\|218370444\|... gi\|218431544, gi... - gi\|218704447\|ref\|YP_002411966.1\| curli assembly protein CsgE [Escherichia coli UMN026], gi\|218431544...	5.0E-42	[1..131]	[1..129]
gi\|24051318, gi\|... - gi\|24112439\|ref\|NP_706949.1\| curli assembly protein CsgE [Shigella flexneri 2a str. 301], gi\|2405131... gi\|30040809, gi\|... - gi\|30062563\|ref\|NP_836734.1\| curli assembly protein CsgE [Shigella flexneri 2a str. 2457T], gi\|30040... gi\|110614596, gi... - gi\|110805048\|ref\|YP_688568.1\| curli assembly protein CsgE [Shigella flexneri 5 str. 8401], gi\|110614...	1.0E-41	[1..131]	[1..129]
gi\|83570514, gi\|... - gi\|83570514\|ref\|ZP_00921958.1\| COG4670: Acyl CoA:acetate/3-ketoacid CoA transferase [Shigella dysent...	2.0E-41	[1..131]	[1..129]
gi\|81240453, gi\|... - gi\|82776305\|ref\|YP_402654.1\| curli assembly protein CsgE [Shigella dysenteriae Sd197], gi\|81240453\|g...	2.0E-41	[1..131]	[1..129]
gi\|117614025, gi... - gi\|78684721\|ref\|ZP_00849504.1\| curli production assembly/transport component CsgE, putative [Shewane...	2.0E-39	[2..122]	[6..128]
gi\|78688743, gi\|... - gi\|78688743\|ref\|ZP_00853410.1\| curli production assembly/transport component CsgE, putative [Shewane...	3.0E-39	[2..122]	[6..128]
gi\|113969212, gi... - gi\|82495032\|ref\|ZP_00880610.1\| curli production assembly/transport component CsgE, putative [Shewane...	4.0E-39	[2..122]	[6..128]
gi\|146294076, gi... - gi\|77813146\|ref\|ZP_00812427.1\| curli production assembly/transport component CsgE, putative [Shewane... gi\|82720557, gi\|... - gi\|82742098\|ref\|ZP_00904802.1\| curli production assembly/transport component CsgE, putative [Shewane... gi\|124546300, gi... - gi\|124546300\|ref\|ZP_01705405.1\| curli production assembly/transport component CsgE, putative [Shewan...	1.0E-38	[2..122]	[6..128]
gi\|68521854, gi\|... - gi\|68540635\|ref\|ZP_00580386.1\| curli production assembly/transport component CsgE, putative [Shewane... gi\|217497346, gi... - gi\|217972211\|ref\|YP_002356962.1\| curli production assembly/transport component CsgE, putative [Shewa... gi\|160874156, gi... - gi\|160874156\|ref\|YP_001553472.1\| curli production assembly/transport component CsgE, putative [Shewa...	2.0E-38	[2..122]	[6..128]
gi\|24375185, gi\|... - gi\|24375185\|ref\|NP_719228.1\| curli production assembly/transport component CsgE, putative [Shewanell... SO3687 - curli production assembly/transport component CsgE putative	5.0E-37	[5..126]	[8..135]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRYLTWIVA AELLFATGNL HANEVEVEVP GLLTDHTVSS IGHEFYRAFS DKWESEYTGN  60
   61 LTINERPSAR WGSWITITVN QDVIFQTFLF PMKRDFEKTV VFALAQTEEA LNRRQIDQTL 120
  121 LSTSDLARDE F

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.802	d.202.1	Transcription factor NusA, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits