YRC Public Data Repository - Protein Structure Prediction

Protein:	LEU1_YERP3
Organism:	Yersinia pseudotuberculosis IP 31758
Length:	520 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEU1_YERP3.

Description	E-value	Query Range	Subject Range
gi\|238718475, gi... - gi\|77962082\|ref\|ZP_00825907.1\| COG0119: Isopropylmalate/homocitrate/citramalate synthases [Yersinia ...	0.0	[1..520]	[1..520]
gi\|238714551, gi... - gi\|77958251\|ref\|ZP_00822288.1\| COG0119: Isopropylmalate/homocitrate/citramalate synthases [Yersinia ...	0.0	[1..520]	[1..520]
gi\|22127519, gi\|... - gi\|22127519\|ref\|NP_670942.1\| 2-isopropylmalate synthase [Yersinia pestis KIM], gi\|21960619\|gb\|AAM871... gi\|167054582, gi... - gi\|167426484\|ref\|ZP_02318237.1\| 2-isopropylmalate synthase [Yersinia pestis biovar Mediaevalis str. ...	0.0	[1..520]	[1..520]
gi\|238725074, gi... - gi\|77976116\|ref\|ZP_00831649.1\| COG0119: Isopropylmalate/homocitrate/citramalate synthases [Yersinia ...	0.0	[1..520]	[1..520]
gi\|238729289, gi... - gi\|77977568\|ref\|ZP_00833013.1\| COG0119: Isopropylmalate/homocitrate/citramalate synthases [Yersinia ...	0.0	[1..520]	[1..520]
LEU1_PHOLL - 2-isopropylmalate synthase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 1055... LEU1_PHOLL - 2-isopropylmalate synthase OS=Photorhabdus luminescens subsp. laumondii GN=leuA PE=3 SV=1	0.0	[1..520]	[1..520]
LEU1_BUCAP - 2-isopropylmalate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=leuA PE=... gi\|219730356\|emb... - unnamed protein product [Buchnera aphidicola], unnamed protein product [Buchnera aphidicola], unname... LEU1_BUCAP - 2-isopropylmalate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=leuA PE=3 SV=1	0.0	[1..517]	[1..518]
gi\|194456533, gi... - gi\|194470169\|ref\|ZP_03076153.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica sero... LEU1_SALSV - 2-isopropylmalate synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=leuA PE=3 SV=1 gi\|197243351, gi... - gi\|197265096\|ref\|ZP_03165170.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica sero... LEU1_SALDC - 2-isopropylmalate synthase OS=Salmonella dublin (strain CT_02021853) GN=leuA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=leuA] [protein=2-isopropylmalate synthase] [protein_id=YP_005235767.1] [location=complement(13... gi\|168262205, gi... - gi\|205348821\|gb\|EDZ35452.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica serovar ... gi\|168464339, gi... - gi\|195632830\|gb\|EDX51284.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica serovar ... gi\|205342405, gi... - gi\|205342405\|gb\|EDZ29169.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica serovar ... LEU1_SALHS - 2-isopropylmalate synthase OS=Salmonella heidelberg (strain SL476) GN=leuA PE=3 SV=1 gi\|205331293, gi... - gi\|205331293\|gb\|EDZ18057.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica serovar ... gi\|205335105, gi... - gi\|205335105\|gb\|EDZ21869.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica serovar ... gi\|168234874, gi... - gi\|197291975\|gb\|EDY31325.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica serovar ... gi\|205337488, gi... - gi\|205337488\|gb\|EDZ24252.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica serovar ... LEU1_SALPB - 2-isopropylmalate synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=leuA PE=3 SV=1 LEU1_SALPB - 2-isopropylmalate synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=leuA PE=3 SV=1 gi\|238911171 - gi\|238911171\|ref\|ZP_04655008.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica sero... LEU1_SALTY - 2-isopropylmalate synthase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=leuA P... LEU1_SALTY - 2-isopropylmalate synthase OS=Salmonella typhimurium GN=leuA PE=3 SV=4 gi\|204927123, gi... - gi\|204927123\|ref\|ZP_03218325.1\| 2-isopropylmalate synthase [Salmonella enterica subsp. enterica sero... LEU1_SALG2 - 2-isopropylmalate synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=leuA PE=3 SV=1 LEU1_SALEP - 2-isopropylmalate synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=leuA PE=3 SV=1 LEU1_SALTY - 2-isopropylmalate synthase OS=Salmonella typhimurium GN=leuA PE=3 SV=4	0.0	[1..517]	[1..517]
LEU1_SALCH - 2-isopropylmalate synthase OS=Salmonella choleraesuis GN=leuA PE=3 SV=1 LEU1_SALPC - 2-isopropylmalate synthase OS=Salmonella paratyphi C (strain RKS4594) GN=leuA PE=3 SV=1 LEU1_SALCH - 2-isopropylmalate synthase OS=Salmonella choleraesuis (strain SC-B67) GN=leuA PE=3 SV=1	0.0	[1..517]	[1..517]
LEU1_SALPK - 2-isopropylmalate synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=leuA PE=3 SV=1 LEU1_SALPA - 2-isopropylmalate synthase OS=Salmonella paratyphi A GN=leuA PE=3 SV=1 LEU1_SALPA - 2-isopropylmalate synthase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=leuA PE=3 SV=1	0.0	[1..517]	[1..517]

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Predicted Domain #1

Region A:
Residues: [1-520]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQVIIFDT TLRDGEQALQ ASLSVKEKLQ IALALERMGV DIMEVGFPVS SPGDFESVRT  60
   61 IAQQVKNSRV CALARCVDKD IDVAAEALRI AEAFRIHVFL ATSTLHIESK LKRSFDDVLA 120
  121 MAVHSVKRAR NYTDDVEFSC EDAGRTPIDN LCRVVEAAIT AGATTINIPD TVGYTTPYQF 180
  181 GGIITDLYER VPNIDKAIIS VHCHDDLGMS VANSITAVQA GARQVEGTIN GLGERAGNCS 240
  241 LEEVIMAIKV RHEMLGVHTN INHQEIYRTS QLVSKICNMP IPGNKAIVGS NAFAHSSGIH 300
  301 QDGVLKNREN YEIMTPESIG LKEVQLNLTS RSGRAAVKHR MEEMGYQDKD YNLDSLYDAF 360
  361 LKLADKKGQV FDYDLEALAF INKQQEEPEY YRLDYFSVQS GSSVMATASV KLVCGEEIKS 420
  421 EAATGNGPVD AVYQAINRIT DYPIELVKYQ LSAKGQGKDA LGQVDIVVDH KGRRFHGVGL 480
  481 ATDIVESSAK ALVHVLNNIW RAHQVEKEKQ RLQQNNQEMV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	1sr9A
Description:	Crystal Structure of LeuA from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-isopropylmalate synthase activity	3.07962096729216	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	2.96685031644778	bayes_pls_golite062009
catalytic activity	2.67031204377352	bayes_pls_golite062009
porphobilinogen synthase activity	1.24455949903754	bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	1.14592921123611	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	0.877814788710295	bayes_pls_golite062009
lyase activity	0.740424046054758	bayes_pls_golite062009
binding	0.584966797881465	bayes_pls_golite062009
transaldolase activity	0.468395717570545	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.421097563118217	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.30550563321981	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	0.13873587393116	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: