YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|73986139, gi\|...
Organism:	Canis lupus familiaris
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|73986139, gi|....

Description	E-value	Query Range	Subject Range
gi\|91084013 - gi\|91084013\|ref\|XP_975325.1\| PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated [Tr...	127.0	[0..2]	[139..14]
gi\|13161882 - gi\|13161882\|emb\|CAC33027.1\| Lsm4 protein [Takifugu rubripes]	123.0	[0..1]	[139..1]
gi\|109123961 - gi\|109123961\|ref\|XP_001115319.1\| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm4 (Gly...	119.0	[0..1]	[139..124]
gi\|47217413 - gi\|47217413\|emb\|CAG00773.1\| unnamed protein product [Tetraodon nigroviridis]	119.0	[0..2]	[99..2]
gi\|50761130 - gi\|50761130\|ref\|XP_418245.1\| PREDICTED: similar to Hypothetical protein MGC76085 [Gallus gallus]	119.0	[0..1]	[139..75]
gi\|116058235 - gi\|116058235\|emb\|CAL53424.1\| glycine rich protein-common tobacco sp\|Q43582\|LSM4_TOBAC Probable U6 sn...	118.0	[0..1]	[90..659]
gi\|54311207, gi\|... - gi\|54311207\|gb\|AAH84779.1\| LOC495318 protein [Xenopus laevis], gi\|147902804\|ref\|NP_001088454.1\| hypo...	117.0	[0..1]	[139..1]
gi\|39849973, gi\|... - gi\|52078460\|gb\|AAH82491.1\| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Xenopus tr...	117.0	[0..1]	[139..1]
gi\|37589787, gi\|... - gi\|55963472\|emb\|CAI11914.1\| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Danio rer...	117.0	[0..1]	[136..1]
gi\|82623401, gi\|... - gi\|82623401\|gb\|ABB87115.1\| glycine rich protein-like [Solanum tuberosum], gi\|77745469\|gb\|ABB02633.1\|...	116.0	[0..1]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPLSLLKTA QNHPMLVELK NGETYNGHLV SCDNWMNINL REVICTSRDG DKFWRMPECY  60
   61 IRGSTIKYLR IPDEIIDMVK EEVVAKGRGR GGLQQQKQQK GRGMGGAGRG VFGGRGRGGI 120
  121 PGTGRGQPEK KPGRQAGKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1b34A
Description:	D1 core SNRNP protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits