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View Structure Prediction Details

Protein: gi|77961319
Organism: Yersinia mollaretii ATCC 43969
Length: 61 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|77961319.

Description E-value Query
Range
Subject
Range
gi|255056263, gi... - gi|255056263|ref|ZP_05308481.1| carbon storage regulator, CsrA [Pectobacterium wasabiae WPP163], gi|...
CSRA_PECCP - Carbon storage regulator homolog OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=cs...
gi|224460032 - gi|224460032|gb|ACN43566.1| RsmA [Pectobacterium carotovorum subsp. carotovorum]
CSRA_PECAS - Carbon storage regulator homolog OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN...
gi|86559126, gi|... - gi|86559126|gb|ABD04038.1| RsmA [Pectobacterium carotovorum], gi|5360966|emb|CAB46440.1| RsmA protei...
CSRA_PECSS - Carbon storage regulator homolog OS=Pectobacterium sp. (strain SCC3193) GN=csrA PE=3 SV=1
CSRA_ERWCT - Carbon storage regulator homolog OS=Erwinia carotovora subsp. atroseptica GN=csrA PE=1 SV=1
gi|227329398 - gi|227329398|ref|ZP_03833422.1| carbon storage regulator [Pectobacterium carotovorum subsp. carotovo...
gi|227114945 - gi|227114945|ref|ZP_03828601.1| carbon storage regulator [Pectobacterium carotovorum subsp. brasilie...
gi|247537236, gi... - gi|251788615|ref|YP_003003336.1| carbon storage regulator, CsrA [Dickeya zeae Ech1591], gi|247537236...
gi|242238446, gi... - gi|242238446|ref|YP_002986627.1| carbon storage regulator, CsrA [Dickeya dadantii Ech703], gi|242130...
7.0E-21 [1..61] [1..61]
gi|88773955, gi|... - gi|88794830|ref|ZP_01110535.1| carbon storage regulator [Alteromonas macleodii 'Deep ecotype'], gi|8...
9.0E-21 [1..59] [31..89]
CSRA_SHEDO - Carbon storage regulator homolog OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 150...
9.0E-21 [1..60] [1..60]
CSRA_SALPC - Carbon storage regulator OS=Salmonella paratyphi C (strain RKS4594) GN=csrA PE=3 SV=1
CSRA_ECOLU - Carbon storage regulator OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=csrA PE=3 SV=1
CSRA_SALPA - Carbon storage regulator OS=Salmonella paratyphi A GN=csrA PE=3 SV=1
CSRA_SALCH - Carbon storage regulator OS=Salmonella choleraesuis GN=csrA PE=3 SV=1
CSRA_SALAR - Carbon storage regulator OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=csrA ...
CSRA_ENT38 - Carbon storage regulator homolog OS=Enterobacter sp. (strain 638) GN=csrA PE=3 SV=1
CSRA_ECOLC - Carbon storage regulator OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=csrA PE=3 SV=...
gi|124500954, gi... - gi|124528062|ref|ZP_01699415.1| carbon storage regulator, CsrA [Escherichia coli B], gi|124500954|gb...
EG11447 - pleiotropic regulatory protein for carbon source metabolism / Global regulator of carbon source meta...
CSRA_SALTY - Carbon storage regulator OS=Salmonella typhimurium GN=csrA PE=3 SV=1
CSRA_SALPB - Carbon storage regulator OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=csrA PE=3 SV=1
gi|208812192, gi... - gi|208812192|ref|ZP_03253521.1| carbon storage regulator [Escherichia coli O157:H7 str. EC4045], gi|...
gi|208806912, gi... - gi|208806912|ref|ZP_03249249.1| carbon storage regulator [Escherichia coli O157:H7 str. EC4206], gi|...
CSRA_ECO5E - Carbon storage regulator OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=csrA PE=3 SV=1
gi|208821304, gi... - gi|208821304|ref|ZP_03261624.1| carbon storage regulator [Escherichia coli O157:H7 str. EC4042], gi|...
CSRA_ECOSE - Carbon storage regulator OS=Escherichia coli (strain SE11) GN=csrA PE=3 SV=1
gi|209896784, gi... - gi|209909707|ref|ZP_03284191.1| hypothetical protein ENTCAN_04013 [Enterobacter cancerogenus ATCC 35...
gi|213052377 - gi|213052377|ref|ZP_03345255.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|213021624 - gi|213021624|ref|ZP_03336071.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
CSRA_SALPK - Carbon storage regulator OS=Salmonella paratyphi A (strain AKU_12601) GN=csrA PE=3 SV=1
gi|197264486, gi... - gi|197264486|ref|ZP_03164560.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|200387895, gi... - gi|200387895|ref|ZP_03214507.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
CSRA_SALDC - Carbon storage regulator OS=Salmonella dublin (strain CT_02021853) GN=csrA PE=3 SV=1
CSRA_SALG2 - Carbon storage regulator OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=csrA PE=3 SV=1
gi|204928217, gi... - gi|204928217|ref|ZP_03219417.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|228554276, gi... - gi|228554276|gb|EEK18941.1| hypothetical protein CIT292_04175 [Citrobacter youngae ATCC 29220], gi|2...
CSRA_SALEP - Carbon storage regulator OS=Salmonella enteritidis PT4 (strain P125109) GN=csrA PE=3 SV=1
gi|227888230, gi... - gi|227888230|ref|ZP_04006035.1| carbon storage regulator [Escherichia coli 83972], gi|227834499|gb|E...
CSRA_KLEP3 - Carbon storage regulator homolog OS=Klebsiella pneumoniae (strain 342) GN=csrA PE=3 SV=1
gi|226899724, gi... - gi|237706684|ref|ZP_04537165.1| carbon storage regulator [Escherichia sp. 3_2_53FAA], gi|226899724|g...
gi|217327065, gi... - gi|217327065|ref|ZP_03443148.1| carbon storage regulator [Escherichia coli O157:H7 str. TW14588], gi...
gi|237729650, gi... - gi|237729650|ref|ZP_04560131.1| carbon storage regulator [Citrobacter sp. 30_2], gi|226908256|gb|EEH...
CSRA_ECO27 - Carbon storage regulator OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=csrA PE=3 SV=1
gi|238896147, gi... - gi|238896147|ref|YP_002920883.1| carbon storage regulator [Klebsiella pneumoniae NTUH-K2044], gi|238...
CSRA_ECO8A - Carbon storage regulator OS=Escherichia coli O8 (strain IAI1) GN=csrA PE=3 SV=1
CSRA_ECOBW - Carbon storage regulator OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=csrA PE=3 SV=1
CSRA_ESCF3 - Carbon storage regulator OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=...
gi|238909592 - gi|238909592|ref|ZP_04653429.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
CSRA_ECO81 - Carbon storage regulator OS=Escherichia coli O81 (strain ED1a) GN=csrA PE=3 SV=1
gi|242378253, gi... - gi|251785980|ref|YP_003000284.1| hypothetical protein B21_02511 [Escherichia coli BL21], gi|24237825...
CSRA_ECO45 - Carbon storage regulator OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=csrA PE=3 SV=1
gi|253772449, gi... - gi|254289388|ref|YP_003055136.1| carbon storage regulator [Escherichia coli BL21(DE3)], gi|253978695...
CSRA_ECO7I - Carbon storage regulator OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=csrA PE=3 SV=1
gi|254037734, gi... - gi|254037734|ref|ZP_04871792.1| pleiotropic regulatory protein for carbon source metabolism [Escheri...
CSRA_ECO55 - Carbon storage regulator OS=Escherichia coli (strain 55989 / EAEC) GN=csrA PE=3 SV=1
gi|254162627, gi... - gi|254162627|ref|YP_003045735.1| carbon storage regulator [Escherichia coli B str. REL606], gi|25397...
gi|213426120 - gi|213426120|ref|ZP_03358870.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|254794637, gi... - gi|254794637|ref|YP_003079474.1| post transcriptional regulatory RNA-binding protein [Escherichia co...
gi|213420408 - gi|213420408|ref|ZP_03353474.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|213622610 - gi|213622610|ref|ZP_03375393.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|213579903 - gi|213579903|ref|ZP_03361729.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|213852308 - gi|213852308|ref|ZP_03381840.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|213648834 - gi|213648834|ref|ZP_03378887.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|214000007 - gi|214000007|ref|ZP_03410742.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|213973299 - gi|213973299|ref|ZP_03400558.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|205334423, gi... - gi|205334423|gb|EDZ21187.1| carbon storage regulator [Salmonella enterica subsp. enterica serovar Ke...
gi|205324811, gi... - gi|205324811|gb|EDZ12650.1| carbon storage regulator [Salmonella enterica subsp. enterica serovar Sa...
gi|205349171, gi... - gi|205349171|gb|EDZ35802.1| carbon storage regulator [Salmonella enterica subsp. enterica serovar Ha...
gi|168245265, gi... - gi|205335997|gb|EDZ22761.1| carbon storage regulator [Salmonella enterica subsp. enterica serovar He...
gi|283786757|ref... - carbon storage regulator [Citrobacter rodentium ICC168]
gi|168749983, gi... - gi|188015826|gb|EDU53948.1| carbon storage regulator [Escherichia coli O157:H7 str. EC4113], gi|1687...
gi|195633392, gi... - gi|195633392|gb|EDX51806.1| carbon storage regulator [Salmonella enterica subsp. enterica serovar Ne...
gi|189366837, gi... - gi|189366837|gb|EDU85253.1| carbon storage regulator [Escherichia coli O157:H7 str. EC4501], gi|1687...
CSRA_ECOLI - Carbon storage regulator - Escherichia coli
gi|189357262, gi... - gi|189357262|gb|EDU75681.1| carbon storage regulator [Escherichia coli O157:H7 str. EC4401], gi|1687...
CSRA_CITK8 - Carbon storage regulator homolog OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696...
CSRA_CROS8 - Carbon storage regulator homolog OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=csrA PE=3 SV=1
CSRA_KLEP7 - Carbon storage regulator homolog OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MG...
CSRA_SHIF8 - Carbon storage regulator OS=Shigella flexneri serotype 5b (strain 8401) GN=csrA PE=3 SV=1
CSRA_SHIB3 - Carbon storage regulator OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=csrA PE=3 SV...
gi|170125058, gi... - gi|170765912|ref|ZP_02900723.1| carbon storage regulator [Escherichia albertii TW07627], gi|17012505...
CSRA_SALHS - Carbon storage regulator OS=Salmonella heidelberg (strain SL476) GN=csrA PE=3 SV=1
CSRA_SALNS - Carbon storage regulator OS=Salmonella newport (strain SL254) GN=csrA PE=3 SV=1
gi|1800082, gi|8... - gi|89109483|ref|AP_003263.1| pleiotropic regulatory protein for carbon source metabolism [Escherichi...
CSRA_SALSV - Carbon storage regulator OS=Salmonella schwarzengrund (strain CVM19633) GN=csrA PE=3 SV=1
CSRA_ECOUT - Carbon storage regulator OS=Escherichia coli (strain UTI89 / UPEC) GN=csrA PE=3 SV=1
gi|194472390, gi... - gi|194472390|ref|ZP_03078374.1| carbon storage regulator [Salmonella enterica subsp. enterica serova...
gi|15832807, gi|... - gi|15832807|ref|NP_311580.1| carbon storage regulator [Escherichia coli O157:H7 str. Sakai], gi|1336...
CSRA_SALA4 - Carbon storage regulator OS=Salmonella agona (strain SL483) GN=csrA PE=3 SV=1
CSRA_ECOL5 - Carbon storage regulator OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=csrA PE=3 SV=1
gi|195938444 - gi|195938444|ref|ZP_03083826.1| carbon storage regulator [Escherichia coli O157:H7 str. EC4024]
gi|187769629, gi... - gi|187769629|gb|EDU33473.1| carbon storage regulator [Escherichia coli O157:H7 str. EC4196], gi|1687...
gi|189362077, gi... - gi|189362077|gb|EDU80496.1| carbon storage regulator [Escherichia coli O157:H7 str. EC4486], gi|1687...
gi|189372235, gi... - gi|189372235|gb|EDU90651.1| carbon storage regulator [Escherichia coli O157:H7 str. EC869], gi|16878...
gi|189003298, gi... - gi|189003298|gb|EDU72284.1| carbon storage regulator [Escherichia coli O157:H7 str. EC4076], gi|1687...
gi|205342923, gi... - gi|205342923|gb|EDZ29687.1| carbon storage regulator [Salmonella enterica subsp. enterica serovar We...
gi|168800227, gi... - gi|189377512|gb|EDU95928.1| carbon storage regulator [Escherichia coli O157:H7 str. EC508], gi|16880...
CSRA_ECOSM - Carbon storage regulator OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=csrA PE=3 SV=1
CSRA_ECODH - Carbon storage regulator OS=Escherichia coli (strain K12 / DH10B) GN=csrA PE=3 SV=1
CSRA_SALTI - Carbon storage regulator OS=Salmonella typhi GN=csrA PE=3 SV=1
CSRA_SALTY - Carbon storage regulator OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=csrA PE=...
gi|24113994, gi|... - gi|24113994|ref|NP_708504.1| carbon storage regulator [Shigella flexneri 2a str. 301], gi|24053109|g...
CSRA_ECOL6 - Carbon storage regulator OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=csrA PE=3...
gi|29143086, gi|... - gi|29143086|ref|NP_806428.1| carbon storage regulator [Salmonella enterica subsp. enterica serovar T...
gi|30064056, gi|... - gi|30064056|ref|NP_838227.1| carbon storage regulator [Shigella flexneri 2a str. 2457T], gi|30042312...
CSRA_ECO57 - Carbon storage regulator OS=Escherichia coli O157:H7 GN=csrA PE=3 SV=1
EG11447 - pleiotropic regulatory protein for carbon source metabolism / Global regulator of carbon source meta...
gi|16761602 - gi|16761602|ref|NP_457219.1| carbon storage regulator [Salmonella enterica subsp. enterica serovar T...
gi|12517135, gi|... - gi|15803210|ref|NP_289242.1| carbon storage regulator [Escherichia coli O157:H7 EDL933], gi|12517135...
CSRA_SHIFL - Carbon storage regulator OS=Shigella flexneri GN=csrA PE=3 SV=1
CSRA_SALTY - Carbon storage regulator OS=Salmonella typhimurium GN=csrA PE=3 SV=1
CSRA_SALPB - Carbon storage regulator OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=csrA PE=3 SV=1
CSRA_SHIDS - Carbon storage regulator OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=csrA PE=3 SV=1
CSRA_SALPA - Carbon storage regulator OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=csrA PE=3 SV=1
CSRA_SHISS - Carbon storage regulator OS=Shigella sonnei (strain Ss046) GN=csrA PE=3 SV=1
gi|188495850, gi... - gi|75512394|ref|ZP_00734946.1| COG1551: Carbon storage regulator (could also regulate swarming and q...
CSRA_SALCH - Carbon storage regulator OS=Salmonella choleraesuis (strain SC-B67) GN=csrA PE=3 SV=1
CSRA_SHIBS - Carbon storage regulator OS=Shigella boydii serotype 4 (strain Sb227) GN=csrA PE=3 SV=1
gi|194427834, gi... - gi|75210895|ref|ZP_00711019.1| COG1551: Carbon storage regulator (could also regulate swarming and q...
CSRA_ECOHS - Carbon storage regulator OS=Escherichia coli O9:H4 (strain HS) GN=csrA PE=3 SV=1
CSRA_ECO24 - Carbon storage regulator OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=csrA PE=3 SV=1
gi|194422098, gi... - gi|83585645|ref|ZP_00924288.1| COG1551: Carbon storage regulator (could also regulate swarming and q...
gi|75256896 - gi|75256896|ref|ZP_00728472.1| COG1551: Carbon storage regulator (could also regulate swarming and q...
CSRA_SALTI - Carbon storage regulator OS=Salmonella typhi GN=csrA PE=3 SV=1
gi|190908378, gi... - gi|75241639|ref|ZP_00725476.1| COG1551: Carbon storage regulator (could also regulate swarming and q...
gi|75235711, gi|... - gi|75235711|ref|ZP_00719885.1| COG1551: Carbon storage regulator (could also regulate swarming and q...
gi|75229771, gi|... - gi|75229771|ref|ZP_00716301.1| COG1551: Carbon storage regulator (could also regulate swarming and q...
lcl|NC_016856.1_... - [gene=csrA] [protein=carbon storage regulator] [protein_id=YP_005238922.1] [location=complement(2991...
gi|194433040, gi... - gi|83569948|ref|ZP_00921396.1| COG1551: Carbon storage regulator (could also regulate swarming and q...
sp|B7UHB4|CSRA_ECO27 - Carbon storage regulator OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=csrA PE=3 SV=1
CSRA_ECOL6 - Carbon storage regulator OS=Escherichia coli O6 GN=csrA PE=3 SV=1
CSRA_SALCH - Carbon storage regulator OS=Salmonella choleraesuis GN=csrA PE=3 SV=1
1.0E-20 [1..61] [1..61]
CSRA_PSYWF - Carbon storage regulator homolog OS=Psychrobacter sp. (strain PRwf-1) GN=csrA PE=3 SV=1
1.0E-20 [1..59] [1..59]
gi|227161929, gi... - gi|227357819|ref|ZP_03842167.1| carbon storage regulator [Proteus mirabilis ATCC 29906], gi|22716192...
CSRA_PROMI - Carbon storage regulator homolog OS=Proteus mirabilis GN=csrA PE=3 SV=1
CSRA_PROMH - Carbon storage regulator homolog OS=Proteus mirabilis (strain HI4320) GN=csrA PE=3 SV=1
gi|226328740, gi... - gi|226328740|ref|ZP_03804258.1| hypothetical protein PROPEN_02640 [Proteus penneri ATCC 35198], gi|2...
1.0E-20 [1..59] [1..59]
CSRA_PSEU5 - Carbon storage regulator homolog OS=Pseudomonas stutzeri (strain A1501) GN=csrA PE=3 SV=1
gi|67155200 - gi|67155200|ref|ZP_00416828.1| Carbon storage regulator [Azotobacter vinelandii AvOP]
tr|F2N026|F2N026... - Carbon storage regulator homolog OS=Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A) GN=csrA PE=3 SV...
gi|67087001, gi|... - gi|67155200|ref|ZP_00416828.1| Carbon storage regulator [Azotobacter vinelandii AvOP], gi|67087001|g...
tr|F8H3H8|F8H3H8... - Carbon storage regulator homolog OS=Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 ...
1.0E-20 [1..61] [1..61]
gi|90331476, gi|... - gi|90416723|ref|ZP_01224653.1| carbon storage regulator [marine gamma proteobacterium HTCC2207], gi|...
gi|90416723|ref|... - carbon storage regulator [marine gamma proteobacterium HTCC2207]
2.0E-20 [1..60] [1..60]
gi|124509854, gi... - gi|124546586|ref|ZP_01705653.1| carbon storage regulator, CsrA [Shewanella putrefaciens 200], gi|124...
CSRA_SHESW - Carbon storage regulator homolog OS=Shewanella sp. (strain W3-18-1) GN=csrA PE=3 SV=1
CSRA_SHEPC - Carbon storage regulator homolog OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=csrA PE...
2.0E-20 [1..60] [1..60]
CSRA_PSYCK - Carbon storage regulator homolog OS=Psychrobacter cryohalolentis (strain K5) GN=csrA PE=3 SV=1
2.0E-20 [1..59] [1..59]

Back

Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILTRRVGE TLMIGDEVTV TVLGVKGNQV RIGVNAPKEV SVHREEIYQR IQAEKSQPTT  60
   61 Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 2btiA
Description: Structure-function studies of the RmsA CsrA post-transcriptional global regulator protein family reveals a class of RNA-binding structure
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle