YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75824669, gi\|...
Organism:	Vibrio cholerae RC385
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75824669, gi|....

Description	E-value	Query Range	Subject Range
gi\|124116054, gi... - gi\|153213254\|ref\|ZP_01948666.1\| flagellar protein FliL, putative [Vibrio cholerae 1587], gi\|12411605... gi\|75816892, gi\|... - gi\|75816892\|ref\|ZP_00747350.1\| COG1580: Flagellar basal body-associated protein [Vibrio cholerae V52... gi\|75819208, gi\|... - gi\|75819208\|ref\|ZP_00749300.1\| COG1580: Flagellar basal body-associated protein [Vibrio cholerae V51... gi\|254291363, gi... - gi\|254291363\|ref\|ZP_04962156.1\| flagellar protein FliL, putative [Vibrio cholerae AM-19226], gi\|1977... gi\|149740770, gi... - gi\|153825619\|ref\|ZP_01978286.1\| flagellar protein FliL, putative [Vibrio cholerae MZO-2], gi\|1497407... gi\|121548989, gi... - gi\|121586822\|ref\|ZP_01676604.1\| flagellar protein FliL, putative [Vibrio cholerae 2740-80], gi\|12154...	171.0	[0..1]	[167..1]
gi\|37680659, gi\|... - gi\|37680659\|ref\|NP_935268.1\| flagellar basal body-associated protein FliL [Vibrio vulnificus YJ016],... gi\|27361433, gi\|... - gi\|27365286\|ref\|NP_760814.1\| flagellar basal body-associated protein FliL [Vibrio vulnificus CMCP6],...	161.0	[0..1]	[167..1]
gi\|149749741, gi... - gi\|153841426\|ref\|ZP_01993403.1\| flagellar basal body-associated protein FliL [Vibrio parahaemolyticu... gi\|28807236, gi\|... - gi\|4322003\|gb\|AAD15906.1\| polar flagellar protein FliL [Vibrio parahaemolyticus], gi\|28807236\|dbj\|BA... gi\|28899017, gi\|... - gi\|28899017\|ref\|NP_798622.1\| flagellar basal body-associated protein FliL [Vibrio parahaemolyticus R...	154.0	[0..1]	[167..1]
gi\|91191637, gi\|... - gi\|91223551\|ref\|ZP_01258816.1\| flagellar basal body-associated protein FliL [Vibrio alginolyticus 12...	152.0	[0..1]	[167..1]
gi\|54308122, gi\|... - gi\|54308122\|ref\|YP_129142.1\| flagellar basal body-associated protein FliL [Photobacterium profundum ...	152.0	[0..1]	[167..1]
gi\|75856748, gi\|... - gi\|75856748\|ref\|ZP_00764371.1\| COG1580: Flagellar basal body-associated protein [Vibrio sp. Ex25], g...	152.0	[0..1]	[167..1]
gi\|120598256, gi... - gi\|82741830\|ref\|ZP_00904542.1\| flagellar protein FliL [Shewanella sp. W3-18-1], gi\|82720846\|gb\|EAP55... gi\|77810877, gi\|... - gi\|77814132\|ref\|ZP_00813398.1\| Flagellar basal body-associated protein FliL [Shewanella putrefaciens...	150.0	[0..1]	[167..1]
gi\|84377184, gi\|... - gi\|84388117\|ref\|ZP_00991013.1\| flagellar basal body-associated protein [Vibrio splendidus 12B01], gi...	149.0	[0..1]	[167..1]
gi\|77381775, gi\|... - gi\|77457772\|ref\|YP_347277.1\| flagellar basal body-associated protein FliL [Pseudomonas fluorescens P...	146.0	[0..1]	[167..1]
gi\|90328242, gi\|... - gi\|90411029\|ref\|ZP_01219043.1\| flagellar basal body-associated protein [Photobacterium profundum 3TC...	144.0	[0..1]	[167..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEDLGTEA PKGKKKLLII IIAAVVLLAG GGGAAFFMMG SGGDEAAADA EQKTEQVAAP  60
   61 TDPVSYVNIA QPFVFNVTGD AKDRLVQIKV QLMVRGSENE NLARYHSPLV ESSLLATFAS 120
  121 ATVEQLRTPN GRIELRDKAT DDIKAALNQA VGKPVIEKVL FTDFVMQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.091515
Match:	PF03748.5
Description:	No description for PF03748.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.633	N/A	N/A	d.58.47	Hypothetical protein VC0424
View	Download	0.618	N/A	N/A	d.110.4	SNARE-like
View	Download	0.609	N/A	N/A	d.96.1	Tetrahydrobiopterin biosynthesis enzymes-like
View	Download	0.594	N/A	N/A	d.110.4	SNARE-like
View	Download	0.586	N/A	N/A	d.96.1	Tetrahydrobiopterin biosynthesis enzymes-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits