YRC Public Data Repository - Protein Structure Prediction

Protein:	APT_VIBC3
Organism:	Vibrio cholerae O395
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APT_VIBC3.

Description	E-value	Query Range	Subject Range
gi\|121728162, gi... - gi\|75816264\|ref\|ZP_00746739.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-...	171.0	[0..1]	[181..1]
gi\|91223615, gi\|... - gi\|91223615\|ref\|ZP_01258880.1\| adenine phosphoribosyltransferase [Vibrio alginolyticus 12G01], gi\|91... gi\|75855860, gi\|... - gi\|75855860\|ref\|ZP_00763500.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-...	170.0	[0..1]	[181..1]
APT_HAEIN - Adenine phosphoribosyltransferase OS=Haemophilus influenzae GN=apt PE=3 SV=1 APT_HAEIG - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain PittGG) GN=apt PE=3 SV=1 gi\|42631865 - gi\|42631865\|ref\|ZP_00157403.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|145271773, gi... - gi\|145639211\|ref\|ZP_01794818.1\| adenine phosphoribosyltransferase [Haemophilus influenzae PittII], g... APT_HAEI8 - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain 86-028NP) GN=apt PE=3 SV=1 gi\|144978790, gi... - gi\|145629287\|ref\|ZP_01785086.1\| adenine phosphoribosyltransferase [Haemophilus influenzae 22.1-21], ... APT_HAEIN - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / ... gi\|229810356, gi... - gi\|229846867\|ref\|ZP_04466974.1\| adenine phosphoribosyltransferase [Haemophilus influenzae 7P49H1], g...	169.0	[0..1]	[181..1]
gi\|15157388, gi\|... - gi\|15889512\|ref\|NP_355193.1\| adenine phosphoribosyltransferase [Agrobacterium tumefaciens str. C58],... gi\|25286869 - gi\|25286869\|pir\|\|A97628 adenine phosphoribosyltransferase (AF109172) [imported] - Agrobacterium tume...	168.0	[0..9]	[181..26]
APT_SINMW - Adenine phosphoribosyltransferase OS=Sinorhizobium medicae (strain WSM419) GN=apt PE=3 SV=1	168.0	[0..1]	[181..1]
gi\|6492250 - gi\|6492250\|gb\|AAF14237.1\|AF109172_4 adenine phosphoribosyltransferase [Rhizobium galegae]	168.0	[0..1]	[181..27]
gi\|42629427 - gi\|42629427\|ref\|ZP_00154974.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-...	168.0	[0..1]	[181..1]
APT_VIBF1 - Adenine phosphoribosyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=apt PE=3 SV=1	168.0	[0..1]	[181..1]
APT_RHIL3 - Adenine phosphoribosyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=apt PE=3 SV...	167.0	[0..3]	[181..2]
gi\|149747917, gi... - gi\|153838697\|ref\|ZP_01991364.1\| adenine phosphoribosyltransferase [Vibrio parahaemolyticus AQ3810], ... APT_VIBPA - Adenine phosphoribosyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN... APT_VIBPA - Adenine phosphoribosyltransferase OS=Vibrio parahaemolyticus GN=apt PE=3 SV=1	167.0	[0..1]	[181..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTETLSLIK SSIKSIPDYP KKGILFRDVT SLLEDAQAYQ ATIQLLVEKY KDMGFTKVVG  60
   61 TEARGFLFGA PLALELGVGF VPVRKPGKLP RQTVAQSYEL EYGTDTLEIH VDAIKPGDKV 120
  121 LVVDDLLATG GTIEATTKLI RQLGGEVEHA AFVINLPEIG GDKRLEGLGL QVYSICEFEG 180
  181 H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	2dy0A
Description:	No description for 2dy0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits