YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121727503, gi...
Organism:	Vibrio cholerae V52
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121727503, gi....

Description	E-value	Query Range	Subject Range
MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain CMCP6) GN=mt... MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus GN=mtnN PE=3 SV=1	217.0	[0..1]	[231..1]
MTNN_VIBVY - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain YJ016) GN=mt...	216.0	[0..1]	[231..1]
gi\|75819925, gi\|... - gi\|75819925\|ref\|ZP_00749986.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae V51], gi\|254226150...	212.0	[0..1]	[231..1]
gi\|194539253, gi... - gi\|75855252\|ref\|ZP_00762909.1\| COG0775: Nucleoside phosphorylase [Vibrio sp. Ex25], gi\|254229687\|ref...	210.0	[0..1]	[231..1]
MTNN_VIBPA - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio parahaemolyticus serotype O3:K6... gi\|153838415, gi... - gi\|153838415\|ref\|ZP_01991082.1\| MTA/SAH nucleosidase [Vibrio parahaemolyticus AQ3810], gi\|149748178\|... MTNN_VIBPA - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio parahaemolyticus GN=mtnN PE=3 S...	210.0	[0..1]	[231..1]
MTNN_VIBF1 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio fischeri (strain ATCC 700601 / ... MTNN_VIBFM - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio fischeri (strain MJ11) GN=mtnN ...	209.0	[0..1]	[231..1]
gi\|157734207 - gi\|157734207\|gb\|ABV68926.1\| S-adenosylhomocysteine nucleosidase enzyme [Vibrio alginolyticus] gi\|91226817, gi\|... - gi\|91226817\|ref\|ZP_01261470.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Vibrio al...	209.0	[0..1]	[231..1]
gi\|90580607, gi\|... - gi\|90580607\|ref\|ZP_01236412.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Vibrio an...	206.0	[0..1]	[231..1]
gi\|84376135, gi\|... - gi\|84393229\|ref\|ZP_00991991.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Vibrio sp...	205.0	[0..1]	[231..1]
gi\|85834802, gi\|... - gi\|86147374\|ref\|ZP_01065687.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Vibrio sp...	205.0	[0..1]	[231..1]

Back

Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIGIIGAMQ QEVAILKDLI EDVQEVNQAG CTFYSGQIQG VDVVLLQSGI GKVSAALGTA  60
   61 LLISQYAPDV VINTGSAGGF DASLNVGDVV ISSEVRHHDA DVTAFGYEIG QMAGQPAAFK 120
  121 ADEKLMTVAE QALAQLPNTH AVRGLICTGD AFVCTAERQQ FIRQHFPSVV AVEMEASAIA 180
  181 QTCHQFKVPF VVVRAISDVA DKESPLSFEE FLPLAAKSSS AMVLKMVELL K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.154902
Match:	1jysA
Description:	5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
S-methyl-5-thioadenosine phosphorylase activity	3.89303327575747	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	3.65908655017573	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
purine-nucleoside phosphorylase activity	1.46980781918487	bayes_pls_golite062009
binding	0.716947367672324	bayes_pls_golite062009
transferase activity	0.716715652241981	bayes_pls_golite062009
protein binding	0.294648445670962	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: