YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121728535, gi...
Organism:	Vibrio cholerae V52
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121728535, gi....

Description	E-value	Query Range	Subject Range
gi\|150420931, gi... - gi\|75822562\|ref\|ZP_00752164.1\| COG0561: Predicted hydrolases of the HAD superfamily [Vibrio cholerae... tr\|D7H8J5\|D7H8J5... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_00987 PE=4 SV=1	207.0	[0..1]	[273..1]
gi\|147675343, gi... - gi\|75826748\|ref\|ZP_00756183.1\| COG0561: Predicted hydrolases of the HAD superfamily [Vibrio cholerae...	205.0	[0..1]	[273..1]
gi\|46916887, gi\|... - gi\|54303457\|ref\|YP_133450.1\| hypothetical protein PBPRB1791 [Photobacterium profundum SS9], gi\|46916...	198.0	[0..1]	[268..1]
gi\|90410056, gi\|... - gi\|90410056\|ref\|ZP_01218073.1\| hypothetical protein P3TCK_04796 [Photobacterium profundum 3TCK], gi\|...	196.0	[0..1]	[268..1]
gi\|52787935, gi\|... - gi\|52787935\|ref\|YP_093764.1\| YxeH [Bacillus licheniformis ATCC 14580], gi\|52350437\|gb\|AAU43071.1\| Yx...	195.0	[0..1]	[269..13]
gi\|150016157, gi... - gi\|82746290\|ref\|ZP_00908797.1\| Cof protein:HAD-superfamily hydrolase subfamily IIB [Clostridium beij...	195.0	[0..1]	[269..1]
gi\|16799375 - gi\|16799375\|ref\|NP_469643.1\| hypothetical protein lin0298 [Listeria innocua Clip11262] gi\|25303672, gi\|... - pir\|\|AC1470 conserved hypothetical protein B. subtilis YxeH protein homolog lin0298 [imported] - Lis...	195.0	[0..1]	[269..1]
gi\|221316252 - gi\|221316252\|ref\|ZP_03598057.1\| hypothetical protein BsubsN3_21247 [Bacillus subtilis subsp. subtili... YXEH_BACSU - Putative phosphatase YxeH OS=Bacillus subtilis (strain 168) GN=yxeH PE=3 SV=1 YXEH_BACSU - Uncharacterized protein YxeH OS=Bacillus subtilis GN=yxeH PE=3 SV=1 gi\|221321164 - gi\|221321164\|ref\|ZP_03602458.1\| hypothetical protein BsubsJ_21195 [Bacillus subtilis subsp. subtilis... gi\|221325448 - gi\|221325448\|ref\|ZP_03606742.1\| hypothetical protein BsubsS_21346 [Bacillus subtilis subsp. subtilis...	194.0	[0..1]	[269..1]
gi\|47096361, gi\|... - gi\|47096361\|ref\|ZP_00233956.1\| hydrolase, haloacid dehalogenase-like family [Listeria monocytogenes ... gi\|254900539, gi... - gi\|254900539\|ref\|ZP_05260463.1\| hypothetical protein LmonJ_12014 [Listeria monocytogenes J0161], gi\|... gi\|254937909, gi... - gi\|254937909\|ref\|ZP_05269606.1\| hypothetical protein LmonF6_12304 [Listeria monocytogenes F6900], gi... gi\|127766706, gi... - gi\|254913510\|ref\|ZP_05263522.1\| hypothetical protein LmonJ2_11964 [Listeria monocytogenes J2818], gi...	193.0	[0..1]	[269..1]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKLIALDMD GTLLNSQKQI SPRTKQAIAQ ARQQGIQVVL ASGRPLDGMR SKLEELHLTT  60
   61 ENDYVLYYNG SMVANVGTGE IIHQQIIDGK AAKRVATLAQ EFGLNTHAFS QIHGLITPKT 120
  121 SQYTEVEASI NGLNITEMDF AQLADDHPII KAMIVGEPEK LTQAIAQLPA QWREEFTVVQ 180
  181 SAPFFLEFLN TGSNKGIGVQ AIAAHLGIQA SEVICMGDAE NDHHMLQYAG LGIAMANAME 240
  241 ETKHIADHIT LSNDHDGVAV AIERFALGCF SEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.045757
Match:	1rkqA
Description:	Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
hydrolase activity	0.82377518695623	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: