YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75828021, gi\|...
Organism:	Vibrio cholerae O395
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75828021, gi|....

Description	E-value	Query Range	Subject Range
gi\|91188527, gi\|... - gi\|91227503\|ref\|ZP_01261840.1\| hypothetical protein V12G01_09647 [Vibrio alginolyticus 12G01], gi\|91...	162.0	[0..1]	[196..1]
gi\|75855173, gi\|... - gi\|75855173\|ref\|ZP_00762833.1\| COG0742: N6-adenine-specific methylase [Vibrio sp. Ex25], gi\|11618486...	162.0	[0..1]	[196..1]
gi\|28807983 - gi\|28807983\|dbj\|BAC61220.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28899731, gi\|... - gi\|28899731\|ref\|NP_799336.1\| hypothetical protein VP2957 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|153840067, gi... - gi\|153840067\|ref\|ZP_01992734.1\| putative methyltransferase [Vibrio parahaemolyticus AQ3810], gi\|1497...	159.0	[0..1]	[196..1]
gi\|84393535, gi\|... - gi\|84393535\|ref\|ZP_00992289.1\| hypothetical protein V12B01_06121 [Vibrio splendidus 12B01], gi\|84375...	159.0	[0..1]	[199..1]
gi\|37197034, gi\|... - gi\|37678295\|ref\|NP_932904.1\| N6-adenine-specific methylase [Vibrio vulnificus YJ016], gi\|37197034\|db...	158.0	[0..1]	[197..1]
gi\|85834043, gi\|... - gi\|86148196\|ref\|ZP_01066494.1\| hypothetical protein MED222_19428 [Vibrio sp. MED222], gi\|85834043\|gb... gi\|218710920, gi... - gi\|218710920\|ref\|YP_002418541.1\| putative methylase [Vibrio splendidus LGP32], gi\|218323939\|emb\|CAV2...	157.0	[0..1]	[196..1]
gi\|59481162, gi\|... - gi\|59713061\|ref\|YP_205837.1\| methyltransferase [Vibrio fischeri ES114], gi\|59481162\|gb\|AAW86949.1\| p...	146.0	[0..1]	[198..1]
gi\|89073798, gi\|... - gi\|89073798\|ref\|ZP_01160305.1\| hypothetical protein SKA34_16735 [Photobacterium sp. SKA34], gi\|89050...	145.0	[0..1]	[198..1]
gi\|90581427, gi\|... - gi\|90581427\|ref\|ZP_01237222.1\| hypothetical protein VAS14_21892 [Vibrio angustum S14], gi\|90437404\|g...	144.0	[0..1]	[198..1]
gi\|238789410, gi... - gi\|77973659\|ref\|ZP_00829205.1\| COG0742: N6-adenine-specific methylase [Yersinia frederiksenii ATCC 3...	143.0	[0..3]	[199..4]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRRRQPNPS QKKAPTGQVR IISGLWRGRK LPVHDAEGLR PTTDRVKETL FNWLAQEVPN  60
   61 ARCLDLFAGS GGLGFECASR QANQVTMLEL NPLAFQQLKT NVQSLKAENI ELIHTDALAF 120
  121 LRQSGKPYDV VFIDPPFRQG LLQETTQLLE QNGWLAPQAM IYIECEKELP LTELPPHWHL 180
  181 HREKSAGQVC YRLFIREEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	2fpoA
Description:	Putative methyltransferase yhhF from Escherichia coli.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
N-methyltransferase activity	3.0539218951403	bayes_pls_golite062009
protein methyltransferase activity	3.01384869242051	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
histone methyltransferase activity	1.90505369820945	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
DNA-methyltransferase activity	1.63765148226572	bayes_pls_golite062009
arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.05897361334523	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.639377525568296	bayes_pls_golite062009
O-methyltransferase activity	0.250946859465502	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.130104080746388	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.130042730841119	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: