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View Structure Prediction Details

Protein: gi|75814846, gi|...
Organism: Vibrio cholerae V52
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75814846, gi|....

Description E-value Query
Range
Subject
Range
gi|11352486 - pir||G83137 riboflavin synthase alpha chain PA4055 [imported] - Pseudomonas aeruginosa (strain PAO1)
gi|46164645, gi|... - gi|46164645|ref|ZP_00137498.2| COG0307: Riboflavin synthase alpha chain [Pseudomonas aeruginosa UCBP...
gi|126168875, gi... - gi|84319134|ref|ZP_00967537.1| COG0307: Riboflavin synthase alpha chain [Pseudomonas aeruginosa C371...
gi|254242737, gi... - gi|84325188|ref|ZP_00973228.1| COG0307: Riboflavin synthase alpha chain [Pseudomonas aeruginosa 2192...
gi|9950252, gi|1... - gi|9950252|gb|AAG07442.1|AE004822_2 riboflavin synthase alpha chain [Pseudomonas aeruginosa PAO1], g...
gi|218769887, gi... - gi|218889664|ref|YP_002438528.1| riboflavin synthase subunit alpha [Pseudomonas aeruginosa LESB58], ...
324.0 [0..1] [216..1]
gi|107103569 - gi|107103569|ref|ZP_01367487.1| hypothetical protein PaerPA_01004639 [Pseudomonas aeruginosa PACS2]
324.0 [0..1] [216..1]
gi|150959794, gi... - gi|94417009|ref|ZP_01296831.1| hypothetical protein PaerP_01001205 [Pseudomonas aeruginosa PA7], gi|...
324.0 [0..1] [216..1]
gi|49078224 - gi|49078224|gb|AAT49763.1| PA4055 [synthetic construct]
324.0 [0..1] [216..1]
gi|70732822, gi|... - gi|70732822|ref|YP_262589.1| riboflavin synthase subunit alpha [Pseudomonas fluorescens Pf-5], gi|68...
319.0 [0..1] [216..1]
gi|48728929, gi|... - gi|77461239|ref|YP_350746.1| riboflavin synthase subunit alpha [Pseudomonas fluorescens Pf0-1], gi|7...
319.0 [0..1] [216..1]
gi|28897454, gi|... - gi|28897454|ref|NP_797059.1| riboflavin synthase subunit alpha [Vibrio parahaemolyticus RIMD 2210633...
gi|28805666 - gi|28805666|dbj|BAC58943.1| riboflavin synthase, alpha subunit [Vibrio parahaemolyticus RIMD 2210633...
318.0 [0..1] [217..1]
gi|104779849, gi... - gi|95108836|emb|CAK13532.1| riboflavin synthase alpha chain [Pseudomonas entomophila L48], gi|104779...
gi|95108836 - gi|95108836|emb|CAK13532.1| riboflavin synthase alpha chain [Pseudomonas entomophila L48]
318.0 [0..1] [216..1]
gi|167031577, gi... - gi|167031577|ref|YP_001666808.1| riboflavin synthase subunit alpha [Pseudomonas putida GB-1], gi|166...
gi|26987253, gi|... - gi|26987253|ref|NP_742678.1| riboflavin synthase subunit alpha [Pseudomonas putida KT2440], gi|24981...
gi|82736925, gi|... - gi|82736925|ref|ZP_00899779.1| Lumazine-binding protein [Pseudomonas putida F1], gi|82715969|gb|EAP5...
317.0 [0..1] [216..1]
gi|67157054, gi|... - gi|67157054|ref|ZP_00418416.1| Lumazine-binding protein [Azotobacter vinelandii AvOP], gi|67085731|g...
gi|53611913 - ref|ZP_00090948.2| COG0307: Riboflavin synthase alpha chain [Azotobacter vinelandii]
316.0 [0..1] [216..1]

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Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTGIVEAVG KLTAIIPKGS DVTISVDVGK LDMGDVKLGD SIATNGVCLT VVAFDQRSFS  60
   61 ADLSMETLKK SGFAQYQVGD RVNLEKAMLP TTRFGGHIVS GHVDGVGEIV ERIPVGRAVD 120
  121 LWVNMPAEIS KYVAEKGSIT VDGISLTVND LRKNAFKLTI VPHTSAETTI DEFQVGRRVN 180
  181 LEVDVLARYM ERLLQGQQES EPQSRLTMAF LQQNGFA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.69897
Match: 1i8dA
Description: Riboflavin synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
riboflavin synthase activity 5.11500941509376 bayes_pls_golite062009
catalytic activity 2.05427820269334 bayes_pls_golite062009
transferase activity 0.708491789248912 bayes_pls_golite062009
binding 0.534066059984103 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle