YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121727648, gi...
Organism:	Vibrio cholerae V52
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121727648, gi....

Description	E-value	Query Range	Subject Range
gi\|28897830, gi\|... - gi\|28897830\|ref\|NP_797435.1\| hypothetical protein VP1056 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806043 - gi\|28806043\|dbj\|BAC59319.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	142.0	[0..20]	[155..4]
gi\|37199211, gi\|... - gi\|37680463\|ref\|NP_935072.1\| hypothetical protein VV2279 [Vibrio vulnificus YJ016], gi\|37199211\|dbj\|...	141.0	[0..23]	[155..7]
gi\|86146489, gi\|... - gi\|86146489\|ref\|ZP_01064812.1\| hypothetical protein MED222_12778 [Vibrio sp. MED222], gi\|85835752\|gb...	136.0	[0..22]	[155..6]
gi\|90439008, gi\|... - gi\|90580123\|ref\|ZP_01235931.1\| hypothetical protein VAS14_18096 [Vibrio angustum S14], gi\|90439008\|g...	133.0	[0..18]	[150..1]
gi\|77163679, gi\|... - gi\|77163679\|ref\|YP_342204.1\| 4-hydroxybenzoyl-CoA thioesterase [Nitrosococcus oceani ATCC 19707], gi... gi\|207088616 - gi\|207088616\|gb\|EDZ65888.1\| tol-pal system-associated acyl-CoA thioesterase [Nitrosococcus oceani AF... gi\|224408962, gi... - gi\|254435505\|ref\|ZP_05049012.1\| tol-pal system-associated acyl-CoA thioesterase [Nitrosococcus ocean...	132.0	[0..21]	[155..1]
gi\|27361644, gi\|... - gi\|27365496\|ref\|NP_761024.1\| hypothetical protein VV1_2166 [Vibrio vulnificus CMCP6], gi\|27361644\|gb...	131.0	[0..31]	[155..2]
gi\|59711564, gi\|... - gi\|59711564\|ref\|YP_204340.1\| acyl-CoA thioesterase [Vibrio fischeri ES114], gi\|59479665\|gb\|AAW85452....	129.0	[0..22]	[150..4]
gi\|85830877, gi\|... - gi\|86142845\|ref\|ZP_01061284.1\| putative thioesterase [Flavobacterium sp. MED217], gi\|85830877\|gb\|EAQ... gi\|85830877, gi\|... - gi\|86142845\|ref\|ZP_01061284.1\| putative thioesterase [Flavobacterium sp. MED217], gi\|85830877\|gb\|EAQ...	129.0	[0..21]	[150..1]
gi\|90412125, gi\|... - gi\|90412125\|ref\|ZP_01220131.1\| hypothetical protein P3TCK_27549 [Photobacterium profundum 3TCK], gi\|...	129.0	[0..18]	[150..1]
gi\|91227608, gi\|... - gi\|91227608\|ref\|ZP_01261912.1\| hypothetical protein V12G01_20521 [Vibrio alginolyticus 12G01], gi\|91...	128.0	[0..31]	[155..2]

Back

Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELRYSSSH SSVYEIFIKT MNTFHWPVTV YYEDTDAGGV VYHANYLKFF ERARTEMLRA  60
   61 VGVHQQSLLE QGIGFVVRHM EIDFLKGAKL DDHLEVVTRV SELKKASLTF CQELVNPEGT 120
  121 VLSKAKVKVA CIDNESMRPR ALPQLISLEL NCSDC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1s5uA
Description:	Crystal Structure of Hypothetical Protein EC709 from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.74605540351792	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: