YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|116187907, gi...
Organism:	Vibrio cholerae MO10
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116187907, gi....

Description	E-value	Query Range	Subject Range
gi\|91187931, gi\|... - gi\|91228497\|ref\|ZP_01262419.1\| ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio alginolyticus...	347.0	[0..1]	[245..1]
gi\|28805426, gi\|... - gi\|28897217\|ref\|NP_796822.1\| ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio parahaemolyticu... gi\|28805426 - gi\|28805426\|dbj\|BAC58706.1\| ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio parahaemolyticus...	345.0	[0..1]	[245..1]
gi\|37197523, gi\|... - gi\|37678782\|ref\|NP_933391.1\| ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio vulnificus YJ01...	344.0	[0..1]	[245..1]
gi\|84394627, gi\|... - gi\|84394627\|ref\|ZP_00993323.1\| ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio splendidus 12...	342.0	[0..1]	[245..1]
gi\|27360174, gi\|... - gi\|27364056\|ref\|NP_759584.1\| ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio vulnificus CMCP...	342.0	[0..1]	[245..1]
gi\|86148524, gi\|... - gi\|86148524\|ref\|ZP_01066811.1\| ubiquinol-cytochrome c reductase, cytochrome c1 [Vibrio sp. MED222], ... gi\|218708470, gi... - gi\|218708470\|ref\|YP_002416091.1\| ubiquinol-cytochrome c reductase,cytochrome c1 [Vibrio splendidus L...	339.0	[0..1]	[245..1]
gi\|59480925, gi\|... - gi\|59712824\|ref\|YP_205600.1\| cytochrome c1 [Vibrio fischeri ES114], gi\|59480925\|gb\|AAW86712.1\| cytoc...	338.0	[0..1]	[245..1]
gi\|89074187, gi\|... - gi\|89074187\|ref\|ZP_01160686.1\| putative ubiquinol--cytochrome c reductase, cytochrome c1 [Photobacte...	332.0	[0..1]	[245..1]
gi\|54310321, gi\|... - gi\|54310321\|ref\|YP_131341.1\| putative ubiquinol--cytochrome c reductase, cytochrome c1 [Photobacteri...	332.0	[0..1]	[245..1]
gi\|90413022, gi\|... - gi\|90413022\|ref\|ZP_01221020.1\| putative ubiquinol--cytochrome c reductase, cytochrome c1 [Photobacte...	330.0	[0..1]	[245..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWIVVLFA MLPSLAMAAG ANVHLDKANN DLTDQASLQN GAKLFMNYCF GCHSTQYQRY  60
   61 ERVANDLGIP ADLMKENLIF DPETKIGQLM ENAIPDKSAA KWFGAPPPDL TLVARVRGTD 120
  121 WLYTYLRSFY TDPSRPFGVN NIVFPSVGMP HVLEELQGTP EPIFETKVVD GNEVQHVVGV 180
  181 KSRGNGELSE GEYNQAVRDL VNFLEYSGEP MKLERQNLGW WTMGFLVIFT IVVVALKKEY 240
  241 WRDVH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.30103
Match:	1ezvD
Description:	Cytochrome bc1 domain; Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	3.4564166385356	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	3.4564166385356	bayes_pls_golite062009
electron carrier activity	3.40214573753335	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	3.08381068515965	bayes_pls_golite062009
oxidoreductase activity	2.491960995681	bayes_pls_golite062009
electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	1.41573374177098	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: