YRC Public Data Repository - Protein Structure Prediction

Protein:	BIOD_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIOD_CAMJR.

Description	E-value	Query Range	Subject Range
gi\|91204343 - gi\|91204343\|emb\|CAJ71996.1\| Strong similarity to cobyrinic acid A,C-diamide synthase [Candidatus Kue...	174.0	[0..2]	[197..10]
gi\|89336254, gi\|... - gi\|89896806\|ref\|YP_520293.1\| cobyrinic acid a,c-diamide synthase [Desulfitobacterium hafniense Y51],...	169.0	[0..2]	[198..11]
gi\|83572862, gi\|... - gi\|83589948\|ref\|YP_429957.1\| cobyrinic acid a,c-diamide synthase [Moorella thermoacetica ATCC 39073]...	168.0	[0..2]	[200..5]
gi\|109639724, gi... - gi\|68205857\|ref\|ZP_00558054.1\| Cobyrinic acid a,c-diamide synthase CbiA [Desulfitobacterium hafniens...	168.0	[0..2]	[198..8]
gi\|88951071, gi\|... - gi\|88951071\|ref\|ZP_01153645.1\| Cobyrinic acid a,c-diamide synthase CbiA [Methanosaeta thermophila PT...	167.0	[0..3]	[192..31]
gi\|21227496, gi\|... - gi\|21227496\|ref\|NP_633418.1\| cobyrinic acid a,c-diamide synthase [Methanosarcina mazei Go1], gi\|2090...	166.0	[0..3]	[196..16]
COBB_LISIN - Cobyrinic acid A,C-diamide synthase OS=Listeria innocua GN=cobB PE=3 SV=1 CBIA_LISIN - Cobyrinate a,c-diamide synthase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=cbiA PE=3 SV=1	166.0	[0..2]	[194..3]
gi\|242258423, gi... - gi\|242258423\|ref\|ZP_04803229.1\| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513], g... gi\|114806596, gi... - gi\|167038966\|ref\|YP_001661951.1\| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514], ...	166.0	[0..3]	[200..5]
gi\|146399694, gi... - gi\|88934028\|ref\|ZP_01139672.1\| Cobyrinic acid a,c-diamide synthase CbiA [Geobacter uraniumreducens R...	164.0	[0..1]	[197..1]
gi\|7447738 - pir\|\|S74982 cobyrinic acid a,c-diamide synthase - Synechocystis sp. (strain PCC 6803) CBIA_SYNY3 - Cobyrinate a,c-diamide synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=cbiA PE=3 SV=1 COBB_SYNY3 - Cobyrinic acid A,C-diamide synthase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=cob...	164.0	[0..1]	[193..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIYVSGIHT DVGKTHFSAA FCANFNYDYF KLIQAGTPTD SEFIAKFSPK TKIFKEGIFL  60
   61 QTPASPHLGK IKEKLDYKAL DIILPKSKNL LIELAGGLFS PMDENYTMID FVNIFKHPTI 120
  121 LVAKYYLGSI NHILLSIEAL KQRNINLLAL VMMGKKDILQ DDFIKNYAKI PIINLDFFDE 180
  181 NSILNKDFKE QMQEILQLKI P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1a82A
Description:	DETHIOBIOTIN SYNTHETASE FROM ESCHERICHIA COLI, COMPLEX WITH SUBSTRATES ATP AND DIAMINOPELARGONIC ACID
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: