YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57167055, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57167055, gi|....

Description	E-value	Query Range	Subject Range
gi\|89100628, gi\|... - gi\|89100628\|ref\|ZP_01173486.1\| flagellar protein FliS [Bacillus sp. NRRL B-14911], gi\|89084652\|gb\|EA...	157.0	[0..1]	[128..1]
gi\|120603163, gi... - gi\|120603163\|ref\|YP_967563.1\| flagellar protein FliS [Desulfovibrio vulgaris subsp. vulgaris DP4], g...	156.0	[0..3]	[120..1]
gi\|46448689, gi\|... - gi\|46579275\|ref\|YP_010083.1\| bifunctional flagellar protein FliS/hypothetical protein [Desulfovibrio...	155.0	[0..3]	[120..1]
gi\|77961125 - gi\|77961125\|ref\|ZP_00824971.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia mollaretii ATCC ...	154.0	[0..1]	[125..1]
gi\|77957934 - gi\|77957934\|ref\|ZP_00821977.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia bercovieri ATCC ...	154.0	[0..1]	[125..1]
gi\|77979910 - gi\|77979910\|ref\|ZP_00835326.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia intermedia ATCC ...	153.0	[0..1]	[125..1]
gi\|77975698 - gi\|77975698\|ref\|ZP_00831232.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia frederiksenii AT...	153.0	[0..1]	[125..1]
gi\|78361453, gi\|... - gi\|78366408\|ref\|ZP_00836688.1\| Flagellar protein FliS [Shewanella sp. PV-4], gi\|78361453\|gb\|EAP03277...	153.0	[0..3]	[124..1]
gi\|113969620, gi... - gi\|82495234\|ref\|ZP_00880811.1\| Flagellar protein FliS [Shewanella sp. MR-4], gi\|82406737\|gb\|EAP47400...	152.0	[0..3]	[123..1]
gi\|77868445, gi\|... - gi\|77952610\|ref\|ZP_00817024.1\| Flagellar protein FliS [Marinobacter aquaeolei VT8], gi\|77868445\|gb\|E...	151.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNNLAYNAY SQNQVGIESP QKLIEMLYEG ILRFCARAKV AIRNEDIEQR VYFVKRTTAI  60
   61 FIELINTLNY EKGGEVAHYL SGLYTREIQL LSLANLENNE DRINEVINVT KGLLEAWREV 120
  121 HNNETVAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	1vh6A
Description:	Crystal structure of a flagellar protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.31438572337508	bayes_pls_golite062009
protein binding	0.977368420595996	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: