YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57167088, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57167088, gi|....

Description	E-value	Query Range	Subject Range
gi\|83310639, gi\|... - gi\|83310639\|ref\|YP_420903.1\| phosphoribosylformylglycinamidine synthase [Magnetospirillum magneticum...	126.0	[0..1]	[80..15]
gi\|7447494 - pir\|\|S76654 hypothetical protein - Synechocystis sp. (strain PCC 6803) Y519_SYNY3 - UPF0062 protein slr0519 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=slr0519 PE=3 SV... PURS_SYNY3 - Phosphoribosylformylglycinamidine synthase subunit PurS OS=Synechocystis sp. (strain PCC 6803 / Kazu...	125.0	[0..4]	[78..17]
gi\|23013895 - gi\|23013895\|ref\|ZP_00053744.1\| COG1828: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS comp...	124.0	[0..1]	[80..1]
gi\|67920525, gi\|... - gi\|67920525\|ref\|ZP_00514045.1\| Phosphoribosylformylglycinamidine synthetase PurS [Crocosphaera watso...	124.0	[0..4]	[78..8]
gi\|90334917, gi\|... - gi\|90420942\|ref\|ZP_01228847.1\| phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Au... gi\|90334917, gi\|... - gi\|90420942\|ref\|ZP_01228847.1\| phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Au...	123.0	[0..1]	[78..1]
gi\|161618805, gi... - gi\|161618805\|ref\|YP_001592692.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella c... gi\|25313977 - pir\|\|AE3392 phosphoribosylformylglycinamidine synthase (EC 6.3.5.3) [imported] - Brucella melitensis... gi\|189019602, gi... - gi\|189024030\|ref\|YP_001934798.1\| phosphoribosylformylglycinamidine synthase [Brucella abortus S19], ... gi\|225617338, gi... - gi\|225627333\|ref\|ZP_03785370.1\| phosphoribosylformylglycinamidine synthase, purS protein [Brucella c... gi\|237790110, gi... - gi\|237815273\|ref\|ZP_04594271.1\| phosphoribosylformylglycinamidine synthase, purS protein [Brucella a... gi\|225852354, gi... - gi\|225852354\|ref\|YP_002732587.1\| phosphoribosylformylglycinamidine synthase, purS protein [Brucella ... gi\|254693577 - gi\|254693577\|ref\|ZP_05155405.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella ab... gi\|254689094 - gi\|254689094\|ref\|ZP_05152348.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella ab... gi\|254706947 - gi\|254706947\|ref\|ZP_05168775.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella pi... gi\|254697227 - gi\|254697227\|ref\|ZP_05159055.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella ab... gi\|254713946 - gi\|254713946\|ref\|ZP_05175757.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella ce... gi\|82699715 - gi\|82699715\|ref\|YP_414289.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella melit... gi\|254709946 - gi\|254709946\|ref\|ZP_05171757.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella pi... gi\|23347654, gi\|... - gi\|23501728\|ref\|NP_697855.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella suis ... gi\|62289788, gi\|... - gi\|62289788\|ref\|YP_221581.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella abort... gi\|254730126 - gi\|254730126\|ref\|ZP_05188704.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella ab... gi\|17983096, gi\|... - gi\|17987406\|ref\|NP_540040.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella melit... gi\|82615816 - gi\|82615816\|emb\|CAJ10817.1\| Protein of unknown function UPF0062 [Brucella melitensis biovar Abortus ... gi\|254716996 - gi\|254716996\|ref\|ZP_05178807.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella ce... gi\|148559054, gi... - gi\|148559054\|ref\|YP_001258816.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Brucella o...	121.0	[0..1]	[78..2]
gi\|114768877 - gi\|114768877\|ref\|ZP_01446503.1\| Phosphoribosylformylglycinamidine synthase [alpha proteobacterium HT... gi\|114768877, gi... - gi\|114768877\|ref\|ZP_01446503.1\| Phosphoribosylformylglycinamidine synthase [alpha proteobacterium HT...	121.0	[0..1]	[79..1]
gi\|83360249, gi\|... - gi\|83370102\|ref\|ZP_00914948.1\| Phosphoribosylformylglycinamidine synthetase PurS [Rhodobacter sphaer...	119.0	[0..1]	[78..1]
gi\|25313966 - pir\|\|AB2803 conserved hypothetical protein Atu1844 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17740289, gi\|... - gi\|17935734\|ref\|NP_532524.1\| phosphoribosylformylglycinamidine synthase subunit PurS [Agrobacterium ...	118.0	[0..1]	[79..2]
gi\|14021119, gi\|... - gi\|14021119\|dbj\|BAB47732.1\| msl0067 [Mesorhizobium loti MAFF303099], gi\|13470378\|ref\|NP_101946.1\| ph...	118.0	[0..1]	[78..5]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVIVNISLK NGVLDPQGKA VEKALHSLNF NSVKEVKIAK QIKISLDEKD EKLAKEQVKK  60
   61 MCEELLVNSV IEDYELIIEK E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	1t4aA
Description:	Structure of B. Subtilis PurS C2 Crystal Form
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoribosylformylglycinamidine synthase activity	3.91714662866347	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	3.23248136726321	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	2.69415085754524	bayes_pls_golite062009
catalytic activity	1.60678631669946	bayes_pls_golite062009
ligase activity	0.64521156831328	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: