YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57167300, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57167300, gi|....

Description	E-value	Query Range	Subject Range
gi\|89348478, gi\|... - gi\|89362683\|ref\|ZP_01200487.1\| Peptidase M41, FtsH [Xanthobacter autotrophicus Py2], gi\|89348478\|gb\|...	164.0	[0..3]	[202..172]
FTSH3_SYMTH - ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium thermophilum GN=ftsH3 PE=3 SV=1 FTSH3_SYMTH - ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=...	163.0	[0..3]	[199..172]
gi\|86283151, gi\|... - gi\|86359049\|ref\|YP_470941.1\| cell division metalloproteinase protein [Rhizobium etli CFN 42], gi\|862...	163.0	[0..9]	[202..171]
gi\|115258353, gi... - gi\|116253705\|ref\|YP_769543.1\| putative cell division protein FtsH [Rhizobium leguminosarum bv. vicia...	162.0	[0..9]	[202..171]
gi\|50841750, gi\|... - gi\|50841750\|ref\|YP_054977.1\| putative cell division protein FtsH [Propionibacterium acnes KPA171202]...	162.0	[0..2]	[202..167]
gi\|83750935 - gi\|83750935\|ref\|ZP_00947350.1\| COG0465: ATP-dependent Zn proteases [Bartonella bacilliformis KC583]	162.0	[0..3]	[202..163]
gi\|49476134, gi\|... - gi\|49476134\|ref\|YP_034175.1\| cell division protein ftsH [Bartonella henselae str. Houston-1], gi\|492...	162.0	[0..3]	[202..171]
gi\|86556049, gi\|... - gi\|86607507\|ref\|YP_476269.1\| metalloprotease, ATP-dependent, FtsH family [Cyanobacteria bacterium Ye... gi\|86556049, gi\|... - gi\|86607507\|ref\|YP_476269.1\| FtsH family metalloprotease [Synechococcus sp. JA-2-3B'a(2-13)], gi\|865...	162.0	[0..3]	[202..186]
gi\|25308071 - pir\|\|AI3294 cell division protein ftsH (EC 3.4.24.-) [imported] - Brucella melitensis (strain 16M) gi\|17982240, gi\|... - gi\|17986626\|ref\|NP_539260.1\| cell division protein FTSH [Brucella melitensis 16M], gi\|17982240\|gb\|AA...	161.0	[0..9]	[202..177]
gi\|86604737 - gi\|86604737\|ref\|YP_473500.1\| metalloprotease, ATP-dependent, FtsH family [Cyanobacteria bacterium Ye... gi\|86604737, gi\|... - gi\|86604737\|ref\|YP_473500.1\| FtsH family metalloprotease [Synechococcus sp. JA-3-3Ab], gi\|86553279\|g...	161.0	[0..3]	[202..182]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIIPFREE IFHQINQILE SQKAFIFLWG KSGSGKSVLL QRLAKKYNVD FINENFKDQS  60
   61 FLKEKIEFLI SQGQSLIILD EVGMYDYAML ESIRIYSDSI SFVLSSHKKL NILKKEHFKS 120
  121 RLSACFKLKN ISLLELDDYI KLKFGMNFSN KCLKFLQKIS QGNLRYIDKT LKSFYEINSF 180
  181 FDKNKSQEYI LKLSALENGL LR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	2ce7A
Description:	EDTA treated
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits