YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57238623, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57238623, gi|....

Description	E-value	Query Range	Subject Range
gi\|229681230, gi... - gi\|229901301\|ref\|ZP_04516423.1\| Phosphatidylglycerophosphatase A [Yersinia pestis Nepal516], gi\|2296... gi\|22124911, gi\|... - gi\|22124911\|ref\|NP_668334.1\| phosphatidylglycerophosphatase [Yersinia pestis KIM], gi\|21957748\|gb\|AA...	184.0	[0..3]	[149..24]
gi\|56128682, gi\|... - gi\|56414425\|ref\|YP_151500.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|238911447 - gi\|238911447\|ref\|ZP_04655284.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|205351731, gi... - gi\|205351731\|ref\|YP_002225532.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|197094822, gi... - gi\|197363345\|ref\|YP_002142982.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|16501688, gi\|... - gi\|25323020\|pir\|\|AD0554 phosphatidylglycerophosphatase A [imported] - Salmonella enterica subsp. ent... gi\|16418925, gi\|... - gi\|16763800\|ref\|NP_459415.1\| phosphatidylglycerophosphatase A [Salmonella typhimurium LT2], gi\|16418... gi\|29142831, gi\|... - gi\|29142831\|ref\|NP_806173.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|16759397 - gi\|16759397\|ref\|NP_455014.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|213615895 - gi\|213615895\|ref\|ZP_03371721.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213427854 - gi\|213427854\|ref\|ZP_03360604.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213025238 - gi\|213025238\|ref\|ZP_03339685.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=pgpA] [protein=phosphatidylglycerophosphatase A] [protein_id=YP_005236112.1] [location=473673.... gi\|206707704, gi... - gi\|207855901\|ref\|YP_002242552.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|224582258, gi... - gi\|224582258\|ref\|YP_002636056.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|214000377 - gi\|214000377\|ref\|ZP_03411112.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213855377 - gi\|213855377\|ref\|ZP_03383617.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213650171 - gi\|213650171\|ref\|ZP_03380224.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric...	182.0	[0..3]	[148..22]
gi\|62126664, gi\|... - gi\|62179031\|ref\|YP_215448.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s...	182.0	[0..3]	[148..22]
gi\|110613988, gi... - gi\|110804440\|ref\|YP_687960.1\| phosphatidylglycerophosphatase A [Shigella flexneri 5 str. 8401], gi\|1...	182.0	[0..3]	[148..19]
gi\|218930209, gi... - gi\|218930209\|ref\|YP_002348084.1\| phosphatidylglycerophosphatase A [Yersinia pestis CO92], gi\|1612334... gi\|166960486, gi... - gi\|167421567\|ref\|ZP_02313320.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|167057250, gi... - gi\|167423080\|ref\|ZP_02314833.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Mediaevalis... gi\|167470225 - gi\|167470225\|ref\|ZP_02334929.1\| phosphatidylglycerophosphatase A [Yersinia pestis FV-1] gi\|169752005, gi... - gi\|170025471\|ref\|YP_001721976.1\| phosphatidylglycerophosphatase A [Yersinia pseudotuberculosis YPIII... gi\|186697331, gi... - gi\|186894305\|ref\|YP_001871417.1\| phosphatidylglycerophosphatase A [Yersinia pseudotuberculosis PB1/+... Q66DV5\|Q66DV5_YERPS - Phosphatidylglycerophosphatase A - Yersinia pseudotuberculosis gi\|161484852 - gi\|161484852\|ref\|NP_668334.2\| phosphatidylglycerophosphatase A [Yersinia pestis KIM] gi\|25323022 - pir\|\|AC0386 phosphatidylglycerophosphatase (EC 3.1.3.27) [imported] - Yersinia pestis (strain CO92) gi\|77636303, gi\|... - gi\|77636303\|ref\|ZP_00798378.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Yersi... gi\|165926596, gi... - gi\|165926596\|ref\|ZP_02222428.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|152962208, gi... - gi\|77631908\|ref\|ZP_00794494.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Yersi... gi\|166011042, gi... - gi\|166011042\|ref\|ZP_02231940.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Antiqua str... gi\|51595288, gi\|... - gi\|51595288\|ref\|YP_069479.1\| phosphatidylglycerophosphatase A [Yersinia pseudotuberculosis IP 32953]... gi\|166213094, gi... - gi\|166213094\|ref\|ZP_02239129.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Antiqua str... gi\|45435458, gi\|... - gi\|45440601\|ref\|NP_992140.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Microtus str. ... gi\|167399623, gi... - gi\|167399623\|ref\|ZP_02305147.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Antiqua str... gi\|229899352, gi... - gi\|229899352\|ref\|ZP_04514495.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|229700985, gi... - gi\|229896062\|ref\|ZP_04511232.1\| phosphatidylglycerophosphatase A [Yersinia pestis Pestoides A], gi\|2... gi\|229838784, gi... - gi\|229838784\|ref\|ZP_04458943.1\| phosphatidylglycerophosphatase A [Yersinia pestis biovar Orientalis ... gi\|89105944, gi\|... - gi\|89105944\|ref\|ZP_01178455.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Yersi... gi\|108808664, gi... - gi\|108808664\|ref\|YP_652580.1\| phosphatidylglycerophosphatase A [Yersinia pestis Antiqua], gi\|1087805... gi\|108774722, gi... - gi\|108811074\|ref\|YP_646841.1\| phosphatidylglycerophosphatase A [Yersinia pestis Nepal516], gi\|108774... gi\|149364975, gi... - gi\|149364975\|ref\|ZP_01887010.1\| phosphatidylglycerophosphatase A [Yersinia pestis CA88-4125], gi\|149... gi\|145600073, gi... - gi\|145600073\|ref\|YP_001164149.1\| phosphatidylglycerophosphatase A [Yersinia pestis Pestoides F], gi\|...	182.0	[0..3]	[149..15]
gi\|87249962, gi\|... - gi\|87305502\|ref\|ZP_01087657.1\| Phosphatidylglycerophosphatase A [Campylobacter jejuni subsp. jejuni ...	182.0	[0..1]	[166..1]
gi\|218557327, gi... - gi\|218557327\|ref\|YP_002390240.1\| phosphatidylglycerophosphatase A [Escherichia coli S88], gi\|2183640... gi\|215263571, gi... - gi\|215485499\|ref\|YP_002327930.1\| phosphatidylglycerophosphatase A [Escherichia coli O127:H6 str. E23... gi\|115511803, gi... - gi\|117622679\|ref\|YP_851592.1\| phosphatidylglycerophosphatase A [Escherichia coli APEC O1], gi\|115511... gi\|227838660, gi... - gi\|227884574\|ref\|ZP_04002379.1\| phosphatidylglycerophosphatase A [Escherichia coli 83972], gi\|227838... gi\|26106822, gi\|... - gi\|26246424\|ref\|NP_752463.1\| phosphatidylglycerophosphatase A [Escherichia coli CFT073], gi\|26106822... gi\|75238745 - gi\|75238745\|ref\|ZP_00722733.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|91209487, gi\|... - gi\|91209487\|ref\|YP_539473.1\| phosphatidylglycerophosphatase A [Escherichia coli UTI89], gi\|91071061\|... gi\|237707588, gi... - gi\|237707588\|ref\|ZP_04538069.1\| phosphatidylglycerophosphatase A [Escherichia sp. 3_2_53FAA], gi\|226... gi\|110342271, gi... - gi\|110640679\|ref\|YP_668407.1\| phosphatidylglycerophosphatase A [Escherichia coli 536], gi\|110342271\|...	181.0	[0..3]	[148..22]
gi\|86152298, gi\|... - gi\|86152298\|ref\|ZP_01070509.1\| phosphatidylglycerophosphatase A [Campylobacter jejuni subsp. jejuni ...	181.0	[0..1]	[166..1]
EG10704 - phosphatidylglycerophosphatase A / Phosphatidylglycerophosphatase A, membrane bound gi\|238862032, gi... - gi\|238899706\|ref\|YP_002925502.1\| phosphatidylglycerophosphatase A [Escherichia coli BW2952], gi\|2388... gi\|242376196, gi... - gi\|251783923\|ref\|YP_002998227.1\| hypothetical protein B21_00370 [Escherichia coli BL21], gi\|24237619... gi\|254287288, gi... - gi\|254287288\|ref\|YP_003053036.1\| phosphatidylglycerophosphatase A [Escherichia coli BL21(DE3)], gi\|2... gi\|253972385, gi... - gi\|254160484\|ref\|YP_003043592.1\| phosphatidylglycerophosphatase A [Escherichia coli B str. REL606], ... PGPA_ECOLI - Phosphatidylglycerophosphatase A (EC 3.1.3.27) - Escherichia coli gi\|85674558, gi\|... - gi\|89107288\|ref\|AP_001068.1\| phosphatidylglycerophosphatase A [Escherichia coli str. K-12 substr. W3... gi\|74310987, gi\|... - gi\|74310987\|ref\|YP_309406.1\| phosphatidylglycerophosphatase A [Shigella sonnei Ss046], gi\|73854464\|g... gi\|188488732, gi... - gi\|75512479\|ref\|ZP_00735018.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|75256790 - gi\|75256790\|ref\|ZP_00728395.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|157081317, gi... - gi\|75189485\|ref\|ZP_00702752.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|75176892, gi\|... - gi\|75176892\|ref\|ZP_00697008.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Shige... gi\|83723250, gi\|... - gi\|83750083\|ref\|ZP_00946958.1\| Phosphatidylglycerophosphatase A [Ralstonia solanacearum UW551], gi\|8... gi\|83585663 - gi\|83585663\|ref\|ZP_00924305.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|75237200 - gi\|75237200\|ref\|ZP_00721247.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|75230143 - gi\|75230143\|ref\|ZP_00716647.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|75209974 - gi\|75209974\|ref\|ZP_00710163.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|157159939, gi... - gi\|75194637\|ref\|ZP_00704707.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|169887839, gi... - gi\|170080004\|ref\|YP_001729324.1\| phosphatidylglycerophosphatase A [Escherichia coli str. K-12 substr... gi\|170021210, gi... - gi\|170021210\|ref\|YP_001726164.1\| phosphatidylglycerophosphatase A [Escherichia coli ATCC 8739], gi\|1... gi\|218357463, gi... - gi\|218549922\|ref\|YP_002383713.1\| phosphatidylglycerophosphatase A [Escherichia fergusonii ATCC 35469... gi\|209917631, gi... - gi\|209917631\|ref\|YP_002291715.1\| phosphatidylglycerophosphatase A [Escherichia coli SE11], gi\|209910... gi\|83570314 - gi\|83570314\|ref\|ZP_00921759.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Shige... gi\|218350610, gi... - gi\|218693878\|ref\|YP_002401545.1\| phosphatidylglycerophosphatase A [Escherichia coli 55989], gi\|21835... gi\|218552981, gi... - gi\|218552981\|ref\|YP_002385894.1\| phosphatidylglycerophosphatase A [Escherichia coli IAI1], gi\|218359... gi\|124500208, gi... - gi\|124528871\|ref\|ZP_01700056.1\| Phosphatidylglycerophosphatase [Escherichia coli B], gi\|124500208\|gb... gi\|218368659, gi... - gi\|218698673\|ref\|YP_002406302.1\| phosphatidylglycerophosphatase A [Escherichia coli IAI39], gi\|21836... EG10704 - phosphatidylglycerophosphatase A / Phosphatidylglycerophosphatase A, membrane bound	181.0	[0..3]	[148..22]
gi\|25323011, gi\|... - pir\|\|C85538 phosphatidylglycerophosphatase [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|12513273, gi\|... - gi\|15800147\|ref\|NP_286159.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 EDL933], gi\|... gi\|13359928, gi\|... - gi\|15829725\|ref\|NP_308498.1\| phosphatidylglycerophosphatase [Escherichia coli O157:H7], gi\|13359928\|... gi\|195938517 - gi\|195938517\|ref\|ZP_03083899.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 str. EC40... gi\|13359928, gi\|... - gi\|15829725\|ref\|NP_308498.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 str. Sakai],... gi\|254791601, gi... - gi\|254791601\|ref\|YP_003076438.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 str. TW1... gi\|218703700, gi... - gi\|218703700\|ref\|YP_002411219.1\| phosphatidylglycerophosphatase A [Escherichia coli UMN026], gi\|2184...	180.0	[0..3]	[148..22]

Back

Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLFLTFFY SGSVKKASGT FGTIAALIPA FFILKYLGIN TLFLLSILIF VASIRVIDDY  60
   61 EKKTGIHDDK HIVIDEVAGV FLACAIAASV ENSIVNFILA FVLFRLFDIT KPSIIGKIDK 120
  121 KVKGGLGVML DDMLAGLFAG LLSAVIYGFL LKFNLVFWDI NLKDLF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.27
Match:	1rfzA
Description:	Structure of hypothetical protein APC35681 from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits