YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237126, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237126, gi|....

Description	E-value	Query Range	Subject Range
gi\|5458403, gi\|7... - pir\|\|F75073 pyrazinamidase/nicotinamidase PAB1720 - Pyrococcus abyssi (strain Orsay), gi\|5458403\|em... gi\|5458403, gi\|1... - gi\|5458403\|emb\|CAB49891.1\| Amidase related to nicotinamidase [Pyrococcus abyssi GE5], gi\|14521185\|re...	178.0	[0..4]	[173..5]
gi\|57159909, gi\|... - gi\|57641585\|ref\|YP_184063.1\| nicotinamidase [Thermococcus kodakarensis KOD1], gi\|57159909\|dbj\|BAD858...	177.0	[0..2]	[172..3]
gi\|14590841, gi\|... - gi\|3257413\|dbj\|BAA30096.1\| 180aa long hypothetical pyrazinamidase/nicotinamidase [Pyrococcus horikos... gi\|17943390, gi\|... - pir\|\|B71092 probable pyrazinamidase/nicotinamidase - Pyrococcus horikoshii, gi\|17943390\|pdb\|1ILW\|A ...	175.0	[0..4]	[173..5]
gi\|18977477, gi\|... - gi\|18977477\|ref\|NP_578834.1\| pyrazinamidase/nicotinamidase pxnc [Pyrococcus furiosus DSM 3638], gi\|1...	172.0	[0..4]	[172..5]
gi\|19886895, gi\|... - gi\|20093942\|ref\|NP_613789.1\| nicotinamidase-like amidase [Methanopyrus kandleri AV19], gi\|19886895\|g...	169.0	[0..1]	[173..1]
gi\|15606301, gi\|... - gi\|2983496\|gb\|AAC07074.1\| pyrazinamidase/nicotinamidase [Aquifex aeolicus VF5], gi\|15606301\|ref\|NP_2... gi\|7445162 - pir\|\|B70386 pyrazinamidase/nicotinamidase - Aquifex aeolicus	168.0	[0..2]	[173..8]
gi\|7429496 - pir\|\|G69518 isochorismatase (entB) homolog - Archaeoglobus fulgidus gi\|11499734, gi\|... - gi\|2648379\|gb\|AAB89104.1\| isochorismatase (entB) [Archaeoglobus fulgidus DSM 4304], gi\|11499734\|ref\|...	167.0	[0..4]	[173..3]
gi\|27381262, gi\|... - gi\|27381262\|ref\|NP_772791.1\| isochorismatase family protein [Bradyrhizobium japonicum USDA 110], gi\|...	167.0	[0..3]	[171..24]
gi\|82702035, gi\|... - gi\|82702035\|ref\|YP_411601.1\| isochorismatase hydrolase [Nitrosospira multiformis ATCC 25196], gi\|824...	166.0	[0..4]	[173..10]
gi\|91778735, gi\|... - gi\|91778735\|ref\|YP_553943.1\| isochorismatase family protein [Burkholderia xenovorans LB400], gi\|9169...	162.0	[0..3]	[171..23]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAFVLVDY QNDFIDGSLG FDKALKIKEN ILKALNQIDF NNTHLLLTYD THDEHYLQSK  60
   61 EGLNLPVKHC IKESLGWQMP KEFEPFLQKA HKIFYKNTFG SLELANFIQK SDYEELHFAG 120
  121 LVSHICVFCN IILAFGAKPN ARIILHQNLS ASFDENLEKS AFDILRAYGI EIV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1ilwA
Description:	Pyrazinamidase/nicotinamidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nicotinamidase activity	2.13286334023234	bayes_pls_golite062009
catalytic activity	1.36249099970982	bayes_pls_golite062009
hydrolase activity	0.255811844447115	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.0881035930445095	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: