YRC Public Data Repository - Protein Structure Prediction

Protein:	MIAA_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIAA_CAMJR.

Description	E-value	Query Range	Subject Range
MIAA_BACHD - tRNA dimethylallyltransferase OS=Bacillus halodurans GN=miaA PE=1 SV=1 MIAA_BACHD - tRNA dimethylallyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / ...	379.0	[0..3]	[286..4]
MIAA_PHOLL - tRNA dimethylallyltransferase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 1... MIAA_PHOLL - tRNA dimethylallyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=miaA PE=3 SV=1	374.0	[0..1]	[288..9]
gi\|15602770, gi\|... - gi\|15602770\|ref\|NP_245842.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Pasteurella multoci...	371.0	[0..2]	[287..47]
gi\|77976471 - gi\|77976471\|ref\|ZP_00831958.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Yersinia...	370.0	[0..2]	[277..10]
gi\|77957805 - gi\|77957805\|ref\|ZP_00821852.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Yersinia...	370.0	[0..2]	[277..10]
MIAA_SHIB3 - tRNA dimethylallyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=miaA PE...	370.0	[0..1]	[277..9]
gi\|77961306 - gi\|77961306\|ref\|ZP_00825147.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Yersinia...	370.0	[0..2]	[277..10]
MIAA_SALSV - tRNA dimethylallyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=miaA PE=3 SV=1 gi\|194470981, gi... - gi\|194470981\|ref\|ZP_03076965.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enter... gi\|168464756, gi... - gi\|195632695\|gb\|EDX51149.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enterica ... gi\|205347915, gi... - gi\|205347915\|gb\|EDZ34546.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enterica ... MIAA_SALDC - tRNA dimethylallyltransferase OS=Salmonella dublin (strain CT_02021853) GN=miaA PE=3 SV=1 gi\|197265179, gi... - gi\|197265179\|ref\|ZP_03165253.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enter... MIAA_SALTY - tRNA dimethylallyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=mia... lcl\|NC_016856.1_... - [gene=miaA] [protein=tRNA delta(2)-isopentenylpyrophosphate transferase] [protein_id=YP_005240672.1]... gi\|197287603, gi... - gi\|197287603\|gb\|EDY26995.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enterica ... gi\|205334313, gi... - gi\|205334313\|gb\|EDZ21077.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enterica ... gi\|205327103, gi... - gi\|205327103\|gb\|EDZ13867.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enterica ... MIAA_SALTY - tRNA delta(2)-isopentenylpyrophosphate transferase OS=Salmonella typhimurium GN=miaA PE=3 SV=2 MIAA_SALTY - tRNA dimethylallyltransferase OS=Salmonella typhimurium GN=miaA PE=3 SV=2	370.0	[0..1]	[278..9]
MIAA_SALCH - tRNA dimethylallyltransferase OS=Salmonella choleraesuis GN=miaA PE=3 SV=1 MIAA_SALCH - tRNA dimethylallyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=miaA PE=3 SV=1 MIAA_SALCH - tRNA delta(2)-isopentenylpyrophosphate transferase OS=Salmonella choleraesuis GN=miaA PE=3 SV=1 MIAA_SALPC - tRNA dimethylallyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=miaA PE=3 SV=1	369.0	[0..1]	[278..9]
gi\|191165623, gi... - gi\|75231236\|ref\|ZP_00717643.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Escheric...	369.0	[0..1]	[277..9]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFEIALIGT TASGKTYIAN TLAREFNAVV LSLDSLCVYK EINIASAKPS QDDLASIKYF  60
   61 GVNLLSVNEH FNVELFIREY QKAKEFALAR NLPLIIVGGT GFYLKTMIDG LSEKTLESKS 120
  121 SLNNDEIYAL LLNIDPNYKI EKNDTYRLKK WLGIYEQTRE IPSEFLKRTQ KTGVLKDIEI 180
  181 YELAWDKEIL KKRIKTRTKE MLDNGLLDEA KILFSKFDHK LKALNSIGLK ECKEYLDGEI 240
  241 SFKELENLIT IHTTQLAKRQ RTFNKKFQSK ALEFDKALAT LRMKFSIEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	2qgnA
Description:	No description for 2qgnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits