YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPD_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPD_CAMJR.

Description	E-value	Query Range	Subject Range
gi\|91226235, gi\|... - gi\|91226235\|ref\|ZP_01261075.1\| F0F1 ATP synthase subunit delta [Vibrio alginolyticus 12G01], gi\|9118...	168.0	[0..1]	[164..1]
ATPD_VIBAL - ATP synthase subunit delta OS=Vibrio alginolyticus GN=atpH PE=3 SV=1 gi\|116185028, gi... - gi\|75855547\|ref\|ZP_00763195.1\| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...	167.0	[0..1]	[164..1]
ATPD_VIBPA - ATP synthase subunit delta OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=atpH P... ATPD_VIBPA - ATP synthase subunit delta OS=Vibrio parahaemolyticus GN=atpH PE=3 SV=1	167.0	[0..1]	[164..1]
ATPD_SALCH - ATP synthase subunit delta OS=Salmonella choleraesuis (strain SC-B67) GN=atpH PE=3 SV=1 ATPD_SALPA - ATP synthase subunit delta OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=atpH PE=3 SV=1 gi\|238913121 - gi\|238913121\|ref\|ZP_04656958.1\| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica... ATPD_SALTY - ATP synthase subunit delta OS=Salmonella typhimurium GN=atpH PE=3 SV=1 ATPD_SALCH - ATP synthase subunit delta OS=Salmonella choleraesuis GN=atpH PE=3 SV=1 ATPD_SALPA - ATP synthase subunit delta OS=Salmonella paratyphi A GN=atpH PE=3 SV=1 ATPD_SALNS - ATP synthase subunit delta OS=Salmonella newport (strain SL254) GN=atpH PE=3 SV=1 ATPD_SALHS - ATP synthase subunit delta OS=Salmonella heidelberg (strain SL476) GN=atpH PE=3 SV=1 gi\|194455363, gi... - gi\|194468999\|ref\|ZP_03074983.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica ... ATPD_SALSV - ATP synthase subunit delta OS=Salmonella schwarzengrund (strain CVM19633) GN=atpH PE=3 SV=1 gi\|205335973, gi... - gi\|205335973\|gb\|EDZ22737.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero... gi\|205348120, gi... - gi\|205348120\|gb\|EDZ34751.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero... gi\|168464797, gi... - gi\|195632282\|gb\|EDX50766.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero... gi\|205340513, gi... - gi\|205340513\|gb\|EDZ27277.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero... ATPD_SALPB - ATP synthase subunit delta OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpH PE=3 SV=1 gi\|205327319, gi... - gi\|205327319\|gb\|EDZ14083.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero... gi\|168234376, gi... - gi\|205331673\|gb\|EDZ18437.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero... gi\|168239812, gi... - gi\|197287554\|gb\|EDY26947.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica sero... gi\|213649861 - gi\|213649861\|ref\|ZP_03379914.1\| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica... gi\|213852795 - gi\|213852795\|ref\|ZP_03382327.1\| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica... gi\|214001327 - gi\|214001327\|ref\|ZP_03412062.1\| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica... ATPD_SALPC - ATP synthase subunit delta OS=Salmonella paratyphi C (strain RKS4594) GN=atpH PE=3 SV=1 gi\|213028744 - gi\|213028744\|ref\|ZP_03343191.1\| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica... gi\|213052667 - gi\|213052667\|ref\|ZP_03345545.1\| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica... gi\|213427467 - gi\|213427467\|ref\|ZP_03360217.1\| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica... gi\|213609336 - gi\|213609336\|ref\|ZP_03369162.1\| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica... gi\|199604774, gi... - gi\|200387676\|ref\|ZP_03214288.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica ... gi\|204928690, gi... - gi\|204928690\|ref\|ZP_03219889.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica ... ATPD_SALG2 - ATP synthase subunit delta OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=atpH PE=3 SV=1 ATPD_SALEP - ATP synthase subunit delta OS=Salmonella enteritidis PT4 (strain P125109) GN=atpH PE=3 SV=1 ATPD_SALA4 - ATP synthase subunit delta OS=Salmonella agona (strain SL483) GN=atpH PE=3 SV=1 gi\|197262699, gi... - gi\|197262699\|ref\|ZP_03162773.1\| ATP synthase F1, delta subunit [Salmonella enterica subsp. enterica ... ATPD_SALPK - ATP synthase subunit delta OS=Salmonella paratyphi A (strain AKU_12601) GN=atpH PE=3 SV=1 ATPD_SALDC - ATP synthase subunit delta OS=Salmonella dublin (strain CT_02021853) GN=atpH PE=3 SV=1 ATPD_SALPB - ATP synthase subunit delta OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=atpH PE=3 SV=1 lcl\|NC_016856.1_... - [gene=atpH] [protein=F0F1 ATP synthase subunit delta] [protein_id=YP_005240136.1] [location=compleme... gi\|29139582, gi\|... - gi\|29143946\|ref\|NP_807288.1\| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica se... gi\|16762458 - gi\|16762458\|ref\|NP_458075.1\| F0F1 ATP synthase subunit delta [Salmonella enterica subsp. enterica se... ATPD_SALTI - ATP synthase subunit delta OS=Salmonella typhi GN=atpH PE=3 SV=1 ATPD_SALTY - ATP synthase subunit delta OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=atpH P...	165.0	[0..1]	[163..1]
gi\|77961819, gi\|... - gi\|77961819\|ref\|ZP_00825649.1\| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...	165.0	[0..1]	[163..1]
gi\|238783019, gi... - gi\|77958189\|ref\|ZP_00822227.1\| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...	164.0	[0..1]	[163..1]
gi\|90437669, gi\|... - gi\|90581148\|ref\|ZP_01236947.1\| ATP synthase subunit D [Vibrio angustum S14], gi\|90437669\|gb\|EAS62861...	164.0	[0..1]	[164..1]
gi\|77973803, gi\|... - gi\|77973803\|ref\|ZP_00829348.1\| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...	164.0	[0..1]	[163..1]
gi\|37681438, gi\|... - gi\|37681438\|ref\|NP_936047.1\| ATP synthase subunit D [Vibrio vulnificus YJ016], gi\|37200190\|dbj\|BAC96...	164.0	[0..2]	[164..8]
gi\|238727472, gi... - gi\|77977933\|ref\|ZP_00833370.1\| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...	164.0	[0..1]	[163..1]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENIIARRYA KAIASRADIN DFYQNLCILN SAFVLPKFKN IIESNEIKKE RKMEFLDSFF  60
   61 DIKNSSFQNF LRLLIENSRL ECIPQIVKEL ERQKAFKENI FVGIVYSKEK LSQENLKDLE 120
  121 VKLNKKFDAN IKLNNKISQD DSVKIELEEL GYELSFSMKA LQNKLNEYIL KII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1abvA
Description:	N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	14.7422820889757	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	12.9278793563887	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.1783751674743	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.0680074813957	bayes_pls_golite062009
cation transmembrane transporter activity	6.33234611151135	bayes_pls_golite062009
ion transmembrane transporter activity	6.2273693570543	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.80354336411519	bayes_pls_golite062009
transporter activity	4.02094516916098	bayes_pls_golite062009
substrate-specific transporter activity	3.93981768923161	bayes_pls_golite062009
transmembrane transporter activity	3.93135059223129	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: