YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57165860, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57165860, gi|....

Description	E-value	Query Range	Subject Range
gi\|57169038, gi\|... - gi\|57169038\|ref\|ZP_00368166.1\| probable flagellar hook assembly protein Cj0042 [Campylobacter coli R...	216.0	[0..1]	[294..1]
gi\|57016043, gi\|... - gi\|57505770\|ref\|ZP_00371696.1\| hook assembly protein, flagella (flgD), putative [Campylobacter upsal...	210.0	[0..4]	[278..2]
gi\|109690833, gi... - gi\|153952103\|ref\|YP_001397314.1\| flagellar basal body rod modification protein [Campylobacter jejuni...	202.0	[0..24]	[294..25]
gi\|94987009, gi\|... - gi\|94987009\|ref\|YP_594942.1\| flagellar hook capping protein [Lawsonia intracellularis PHE/MN1-00], g...	198.0	[0..24]	[290..3]
gi\|39576966, gi\|... - gi\|42524756\|ref\|NP_970136.1\| basal-body rod modification protein flgD [Bdellovibrio bacteriovorus HD...	198.0	[0..22]	[286..46]
gi\|76812017, gi\|... - gi\|76812017\|ref\|YP_331877.1\| basal-body rod modification protein FlgD [Burkholderia pseudomallei 171...	184.0	[0..9]	[267..202]
gi\|85774325, gi\|... - gi\|86157814\|ref\|YP_464599.1\| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-C], g...	180.0	[0..21]	[255..2]
gi\|7464110 - pir\|\|C64633 hook assembly protein, flagella - Helicobacter pylori (strain 26695) gi\|15645523, gi\|... - gi\|2314043\|gb\|AAD07953.1\| hook assembly protein, flagella (flgD) [Helicobacter pylori 26695], gi\|156...	179.0	[0..44]	[285..26]
gi\|23474990, gi\|... - gi\|78356755\|ref\|YP_388204.1\| basal-body rod modification protein FlgD [Desulfovibrio desulfuricans s...	171.0	[0..39]	[262..21]
gi\|146316321, gi... - gi\|75827492\|ref\|ZP_00756927.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae O395], gi\|22... gi\|194537093, gi... - gi\|75820905\|ref\|ZP_00750943.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae V51], gi\|254... gi\|121631009, gi... - gi\|75816985\|ref\|ZP_00747441.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae V52], gi\|121... gi\|121586270, gi... - gi\|121586270\|ref\|ZP_01676060.1\| basal-body rod modification protein FlgD [Vibrio cholerae 2740-80], ... gi\|124115842, gi... - gi\|153213643\|ref\|ZP_01948916.1\| basal-body rod modification protein FlgD [Vibrio cholerae 1587], gi\|... gi\|124119802, gi... - gi\|153221273\|ref\|ZP_01952288.1\| basal-body rod modification protein FlgD [Vibrio cholerae MAK 757], ... gi\|153817067, gi... - gi\|153817067\|ref\|ZP_01969734.1\| basal-body rod modification protein FlgD [Vibrio cholerae NCTC 8457]... gi\|229512080, gi... - gi\|229512080\|ref\|ZP_04401559.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|183179564, gi... - gi\|183179564\|ref\|ZP_02957775.1\| basal-body rod modification protein FlgD [Vibrio cholerae MZO-3], gi... gi\|116190199, gi... - gi\|75831298\|ref\|ZP_00760563.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae MO10], gi\|25... gi\|75823916, gi\|... - gi\|75823916\|ref\|ZP_00753390.1\| COG1843: Flagellar hook capping protein [Vibrio cholerae RC385], gi\|2... gi\|148875182, gi... - gi\|153829341\|ref\|ZP_01982008.1\| basal-body rod modification protein FlgD [Vibrio cholerae 623-39], g... gi\|149741046, gi... - gi\|153825362\|ref\|ZP_01978029.1\| basal-body rod modification protein FlgD [Vibrio cholerae MZO-2], gi... gi\|227010210, gi... - gi\|227082322\|ref\|YP_002810873.1\| basal-body rod modification protein FlgD [Vibrio cholerae M66-2], g... gi\|229507725, gi... - gi\|229507725\|ref\|ZP_04397230.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229349023, gi... - gi\|229513842\|ref\|ZP_04403304.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229519216, gi... - gi\|229519216\|ref\|ZP_04408659.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229522147, gi... - gi\|229522147\|ref\|ZP_04411564.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|229528797, gi... - gi\|229528797\|ref\|ZP_04418187.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae ... gi\|9656754, gi\|1... - gi\|9656754\|gb\|AAF95343.1\| basal-body rod modification protein FlgD [Vibrio cholerae O1 biovar El Tor... gi\|229607229, gi... - gi\|229607229\|ref\|YP_002877877.1\| flagellar basal-body rod modification protein FlgD [Vibrio cholerae... gi\|11282646 - pir\|\|E82106 basal-body rod modification protein FlgD VC2198 [imported] - Vibrio cholerae (strain N16...	170.0	[0..11]	[250..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISSSDWNLN TTATTSGTTS SGSTSGTTRT DSSSSSGIVS NPNATLDKDA FLKLLLIELQ  60
   61 HQDPTDPMDS DKMLTQTSQL SALEMQQNTN TTMQKMVETM QKLSDSFSTS MSTSALGAIG 120
  121 KMATVSDNKI KLTGADELIA LKMYLP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	6.481486
Match:	PF03963.5
Description:	No description for PF03963.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [147-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDSDENGVTL EIYDSNNKLV FSEKSDAKSI SQGLFTMEWP GRNNDGVYAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.045757
Match:	1xf1A
Description:	Structure of C5a peptidase- a key virulence factor from Streptococcus
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [197-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGEYTVKMVY NNKNGEKITA NYGTYPIEGV VFKDGVAYAK MAGQEVPFDA IQEITDYKLG  60
   61 SSSSTGGSGS SGDSSGGSSD GDSSGSGSTE DGDKEEKA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.976
Match:	2f93A
Description:	K Intermediate Structure of Sensory Rhodopsin II/Transducer Complex in Combination with the Ground State Structure
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits