YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57165879, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57165879, gi|....

Description	E-value	Query Range	Subject Range
gi\|15896180, gi\|... - gi\|15896180\|ref\|NP_349529.1\| dihydroneopterin aldolase fused to 7,8-dihydro-6-hydroxymethylpterin-py... gi\|25288340 - pir\|\|B97260 dihydroneopterin aldolase fused to 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase ...	213.0	[0..4]	[157..90]
gi\|56961897, gi\|... - gi\|56961897\|ref\|YP_173619.1\| 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase [Bacillus clausii ...	211.0	[0..27]	[157..1]
gi\|27886451, gi\|... - gi\|34763775\|ref\|ZP_00144691.1\| Dihydroneopterin aldolase; 2-amino-4-hydroxy-6-hydroxymethyldihydropt...	208.0	[0..4]	[157..90]
gi\|221312211 - gi\|221312211\|ref\|ZP_03594016.1\| 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase [Bacillus subtil... gi\|221317144 - gi\|221317144\|ref\|ZP_03598438.1\| 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase [Bacillus subtil... gi\|221321407 - gi\|221321407\|ref\|ZP_03602701.1\| 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase [Bacillus subtil... HPPK_BACSU - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase OS=Bacillus subtilis GN=folK PE=... HPPK_BACSU - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase OS=Bacillus subtilis (strain 168...	207.0	[0..27]	[157..2]
gi\|24377344, gi\|... - gi\|24379413\|ref\|NP_721368.1\| putative 2-amino-4-hydroxy-6-hydroxymethylpteridine pyrophosphokinase [... gi\|254997475 - gi\|254997475\|dbj\|BAH88076.1\| putative 2-amino-4-hydroxy-6- hydroxymethylpteridine pyrophosphokinase ...	206.0	[0..27]	[157..1]
gi\|77410559, gi\|... - gi\|77410559\|ref\|ZP_00786920.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [...	206.0	[0..27]	[157..1]
gi\|77160935, gi\|... - gi\|77413037\|ref\|ZP_00789239.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [... gi\|23095655, gi\|... - gi\|25011231\|ref\|NP_735626.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [St... gi\|77405855, gi\|... - gi\|77405855\|ref\|ZP_00782938.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [... gi\|76586735, gi\|... - gi\|76797898\|ref\|ZP_00780160.1\| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase ... gi\|76787503, gi\|... - gi\|76787503\|ref\|YP_329819.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [St...	205.0	[0..27]	[157..1]
HPPK_STRP6 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase OS=Streptococcus pyogenes seroty... gi\|56808704 - gi\|56808704\|ref\|ZP_00366425.1\| COG0801: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Strepto... HPPK_STRP6 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase OS=Streptococcus pyogenes seroty... gi\|209559386, gi... - gi\|209559386\|ref\|YP_002285858.1\| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinas...	205.0	[0..27]	[157..1]
gi\|47570198, gi\|... - gi\|47570198\|ref\|ZP_00240852.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase ...	204.0	[0..27]	[157..2]
gi\|22534140, gi\|... - gi\|22537271\|ref\|NP_688122.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [St...	204.0	[0..27]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKIQGVKHF EKSRFFPFFS QNIRSFKYLA LIGLGSNIEP EKKRFDMLFR VMMDDKRFKI  60
   61 LSTSPMLINE AFGFKEQKDF TNAVMLIQTN LHARALLKVL LYYEVKFKRK RTFKNAPRTL 120
  121 DLDLLYFSQK VKRDKWCEVP HKGAKERVSV ILPLGMI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.30103
Match:	2cg8A
Description:	No description for 2cg8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits