YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237288, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237288, gi|....

Description	E-value	Query Range	Subject Range
gi\|78485413, gi\|... - gi\|78485413\|ref\|YP_391338.1\| protein-L-isoaspartate O-methyltransferase [Thiomicrospira crunogena XC...	158.0	[0..1]	[205..1]
gi\|35212265, gi\|... - gi\|37521268\|ref\|NP_924645.1\| protein-L-isoaspartate O-methyltransferase [Gloeobacter violaceus PCC 7...	156.0	[0..7]	[206..26]
gi\|91204215 - gi\|91204215\|emb\|CAJ71868.1\| strongly similar to protein-L-isoaspartate O-methyltransferase [Candidat...	156.0	[0..4]	[206..37]
gi\|7451059 - gi\|7451059\|pir\|\|A71202 probable L-isoaspartyl protein carboxyl methyltransferase - Pyrococcus horiko... gi\|14591631, gi\|... - gi\|3258325\|dbj\|BAA31008.1\| 272aa long hypothetical L-isoaspartyl protein carboxyl methyltransferase ...	156.0	[0..1]	[205..53]
PIMT3_GEOUR - Protein-L-isoaspartate O-methyltransferase 3 OS=Geobacter uraniireducens (strain Rf4) GN=pcm3 PE=3 S...	155.0	[0..4]	[205..25]
gi\|88805625, gi\|... - gi\|88805625\|ref\|ZP_01121144.1\| protein-L-isoaspartate O-methyltransferase [Robiginitalea biformata H...	155.0	[0..3]	[206..22]
gi\|167618994 - gi\|167618994\|ref\|ZP_02387625.1\| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia t... gi\|83719769, gi\|... - gi\|83719769\|ref\|YP_442053.1\| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia thai...	154.0	[0..2]	[209..1]
PIMT2_ARCFU - Protein-L-isoaspartate O-methyltransferase 2 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / ... PIMT2_ARCFU, PIM... - Protein-L-isoaspartate O-methyltransferase 2 OS=Archaeoglobus fulgidus GN=pcm2 PE=3 SV=1, (O27962) P...	154.0	[0..2]	[204..1]
gi\|53802967, gi\|... - gi\|53802967\|ref\|YP_115225.1\| protein-L-isoaspartate O-methyltransferase [Methylococcus capsulatus st...	154.0	[0..3]	[208..17]
gi\|84390120, gi\|... - gi\|84390120\|ref\|ZP_00991382.1\| protein-L-isoaspartate O-methyltransferase [Vibrio splendidus 12B01],...	154.0	[0..1]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAFEQKRCQ NMAEEIAQKV FINEELFNAF CQIPREIFSP LKAHAYRLDA LPLANSQWIS  60
   61 SPLTVAKMTM ALDFKNADSI LEIGCGSGYQ AAILSKVIRR VFTIERIENL AKKAAQTFRE 120
  121 LELFNINVKF DDGQNGWKNY APYDRILFSA YATQIPEILL DQLSDDGILV APILHNGKQF 180
  181 ITRLRKNGTN LQKEILEECL FVPIVDGKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1jg1A
Description:	Protein-L-isoaspartyl O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
O-methyltransferase activity	2.80572106384854	bayes_pls_golite062009
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.41618719255181	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.27388514102581	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.14636302691827	bayes_pls_golite062009
methyltransferase activity	1.12602040164126	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.912806253517973	bayes_pls_golite062009
RNA methyltransferase activity	0.137156050021559	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: