YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57166141, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57166141, gi|....

Description	E-value	Query Range	Subject Range
gi\|68211649, gi\|... - gi\|91772935\|ref\|YP_565627.1\| phosphoserine phosphatase [Methanococcoides burtonii DSM 6242], gi\|9171...	175.0	[0..3]	[207..14]
gi\|119719115, gi... - gi\|119719115\|ref\|YP_919610.1\| ATPase, P-type (transporting), HAD superfamily, subfamily IC [Thermofi...	173.0	[0..9]	[207..468]
gi\|77867288, gi\|... - gi\|77953846\|ref\|ZP_00818250.1\| Phosphoserine phosphatase SerB:HAD-superfamily hydrolase subfamily IB...	172.0	[0..3]	[207..190]
gi\|67922986, gi\|... - gi\|67922986\|ref\|ZP_00516480.1\| Calcium-translocating P-type ATPase, PMCA-type [Crocosphaera watsonii...	172.0	[0..27]	[206..540]
gi\|78170586, gi\|... - gi\|78188387\|ref\|YP_378725.1\| phosphoserine phosphatase SerB [Chlorobium chlorochromatii CaD3], gi\|78...	170.0	[0..3]	[207..224]
gi\|19918508, gi\|... - gi\|20093165\|ref\|NP_619240.1\| sodium/potassium-transporting ATPase, alpha subunit [Methanosarcina ace...	170.0	[0..5]	[207..482]
gi\|115380434, gi... - gi\|115380434\|ref\|ZP_01467422.1\| phosphoserine phosphatase (PSP) (O- phosphoserine phosphohydrolase)...	170.0	[0..3]	[207..600]
gi\|56685435, gi\|... - gi\|56750476\|ref\|YP_171177.1\| cation-transporting ATPase PacL-like protein [Synechococcus elongatus P...	169.0	[0..17]	[207..508]
gi\|81299891, gi\|... - gi\|81299891\|ref\|YP_400099.1\| ATPase, E1-E2 type [Synechococcus elongatus PCC 7942], gi\|81168772\|gb\|A...	169.0	[0..17]	[207..503]
gi\|7436358 - pir\|\|S77052 cation-transporting ATPase (EC 3.6.1.-) pacL-1 - Synechocystis sp. (strain PCC 6803) gi\|16331945, gi\|... - gi\|16331945\|ref\|NP_442673.1\| cation-transporting ATPase; E1-E2 ATPase [Synechocystis sp. PCC 6803], ...	169.0	[0..24]	[207..535]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKLCVFDFD ATLMDGETID ILATAHGKGN QTSEITRHAM TGELDFFESL QKRVSFLKGM  60
   61 SYKKVLELSS TLPLMRGAHE LIQYLKSKNI QIVIFSGGFH EGINPAMQKL GINLGFANYL 120
  121 HHKNDILTGL VGGEMMFSNS KGLMLQRLKS FLNLKTDEVM CVGDGANDLA MFNESGLKIA 180
  181 FCAKEILRSQ ADICIDIKDL KEIIKVI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.045757
Match:	1f5sA
Description:	Phosphoserine phosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoserine phosphatase activity	2.609399110972	bayes_pls_golite062009
catalytic activity	1.55296860681783	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: