YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57238181, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57238181, gi|....

Description	E-value	Query Range	Subject Range
gi\|86151726, gi\|... - gi\|86151726\|ref\|ZP_01069940.1\| hydrogenase assembly chaperone HypC/HupF [Campylobacter jejuni subsp.... gi\|86153290, gi\|... - gi\|86153290\|ref\|ZP_01071494.1\| hydrogenase assembly chaperone HypC/HupF [Campylobacter jejuni subsp....	121.0	[0..1]	[93..1]
gi\|152938629, gi... - gi\|153951183\|ref\|YP_001398140.1\| hydrogenase assembly chaperone HypC/HupF [Campylobacter jejuni subs...	118.0	[0..1]	[93..1]
gi\|57242250, gi\|... - gi\|57242250\|ref\|ZP_00370189.1\| hydrogenase assembly chaperone hypC/hupF [Campylobacter upsaliensis R...	113.0	[0..1]	[93..1]
gi\|222823794, gi... - gi\|57241261\|ref\|ZP_00369208.1\| hydrogenase assembly chaperone hypC/hupF [Campylobacter lari RM2100],...	110.0	[0..1]	[89..1]
HYPC_HELHP - Hydrogenase expression/formation protein hypC OS=Helicobacter hepaticus GN=hypC PE=3 SV=1 HYPC_HELHP - Hydrogenase expression/formation protein HypC OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN...	108.0	[0..1]	[85..1]
gi\|118475307, gi... - gi\|86154560\|ref\|ZP_01072728.1\| hydrogenase assembly chaperone HypC/HupF [Campylobacter fetus subsp. ...	100.0	[0..1]	[88..1]
gi\|186680890, gi... - gi\|53688951\|ref\|ZP_00112364.2\| COG0298: Hydrogenase maturation factor [Nostoc punctiforme PCC 73102]...	100.0	[0..1]	[77..1]
gi\|71849198, gi\|... - gi\|71909577\|ref\|YP_287164.1\| hydrogenase expression/formation protein (HUPF/HYPC) [Dechloromonas aro...	99.0	[0..1]	[79..1]
gi\|75910799, gi\|... - gi\|75910799\|ref\|YP_325095.1\| hydrogenase expression/formation protein (HUPF/HYPC) [Anabaena variabil...	97.0	[0..1]	[76..1]
gi\|7515025, gi\|5... - pir\|\|F75031 hydrogenase expression/formation protein (hypc) PAB7315 - Pyrococcus abyssi (strain Orsa... gi\|14521441, gi\|... - gi\|5458660\|emb\|CAB50147.1\| hypC hydrogenase expression/formation protein [Pyrococcus abyssi GE5], gi...	97.0	[0..1]	[77..1]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLSIPSEIL EIDELNNALV QTLGVKRKVN LDLIDEPLKQ GDYVLIHVGV AMEKIDKEAA  60
   61 LESIKTYQEI VEKMNSGEIK SDEGDLGLNE FHR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2z1cA
Description:	No description for 2z1cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits