YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57167014, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57167014, gi|....

Description	E-value	Query Range	Subject Range
gi\|85841435, gi\|... - gi\|86151806\|ref\|ZP_01070020.1\| DNA/RNA non-specific endonuclease [Campylobacter jejuni subsp. jejuni...	238.0	[0..1]	[216..1]
gi\|28918100, gi\|... - gi\|32403006\|ref\|XP_322116.1\| hypothetical protein [Neurospora crassa], gi\|28918100\|gb\|EAA27781.1\| mi... gi\|85082932 - gi\|85082932\|ref\|XP_957017.1\| mitochondrial nuclease [Neurospora crassa OR74A]	235.0	[0..16]	[214..66]
gi\|85843285, gi\|... - gi\|86153559\|ref\|ZP_01071763.1\| DNA/RNA non-specific endonuclease [Campylobacter jejuni subsp. jejuni... gi\|87304960, gi\|... - gi\|87304960\|ref\|ZP_01087116.1\| DNA/RNA non-specific endonuclease [Campylobacter jejuni subsp. jejuni...	233.0	[0..1]	[216..1]
gi\|46438489, gi\|... - gi\|68478368\|ref\|XP_716805.1\| hypothetical protein CaO19.967 [Candida albicans SC5314], gi\|68478247\|r... orf19.967, orf19... - orf19.967 CGDID:CAL0003747 Assembly 19, Contig19-10080 (110678, 111640) CDS, translated using codon ...	232.0	[0..13]	[214..47]
gi\|28897470, gi\|... - gi\|28897470\|ref\|NP_797075.1\| minor nuclease C1B isoform precursor [Vibrio parahaemolyticus RIMD 2210... gi\|28805682 - gi\|28805682\|dbj\|BAC58959.1\| minor nuclease C1B isoform precursor [Vibrio parahaemolyticus RIMD 22106... gi\|153839021, gi... - gi\|153839021\|ref\|ZP_01991688.1\| DNA/RNA non-specific endonuclease [Vibrio parahaemolyticus AQ3810], ...	231.0	[0..1]	[215..1]
gi\|73968076 - gi\|73968076\|ref\|XP_851160.1\| PREDICTED: similar to Endonuclease G, mitochondrial precursor (Endo G) ...	231.0	[0..18]	[214..60]
gi\|74179514, gi\|... - gi\|77917570\|ref\|NP_001030110.1\| endonuclease G [Rattus norvegicus], gi\|74179514\|dbj\|BAE44115.1\| endo...	230.0	[0..10]	[214..45]
gi\|39939832, gi\|... - gi\|39939832\|ref\|XP_359453.1\| hypothetical protein MG05324.4 [Magnaporthe grisea 70-15], gb\|EAA52632....	230.0	[0..19]	[214..64]
gi\|37679066, gi\|... - gi\|37679066\|ref\|NP_933675.1\| DNA/RNA endonuclease G [Vibrio vulnificus YJ016], gi\|37197808\|dbj\|BAC93...	230.0	[0..1]	[215..1]
NUC1 - Major mitochondrial nuclease, has RNAse and DNA endo- and exonucleolytic activities; has roles in mi... NUC1_YEAST - Mitochondrial nuclease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUC1 PE=1 SV=1	228.0	[0..19]	[214..53]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFIFLLTI SLNIFALEPY KPSADFSSYF NNINCSQILD KFFYLNCYDY KLKGTKAVAY  60
   61 KVEASNLKDR QIKKRPRFED DTNIPKKYRT TWSNYKNSGY TRGHTAPNAS FSFSKAAQNS 120
  121 VFLMSNITPQ NAQINNKIWN EIEQRERNLA LEFQSIEVLN LVLYDKEPQY IKNRIAIPSF 180
  181 YVKIIKTPKF KECYQAPNHE VNDENIKQYQ INCDKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1zm8A
Description:	Apo Crystal structure of Nuclease A from Anabaena sp.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits