YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57167190, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57167190, gi|....

Description	E-value	Query Range	Subject Range
gi\|57168254, gi\|... - gi\|57168254\|ref\|ZP_00367393.1\| transformation system protein [Campylobacter coli RM2228], gi\|5702062...	148.0	[0..1]	[171..1]
gi\|87305346, gi\|... - gi\|87305346\|ref\|ZP_01087501.1\| transformation system protein [Campylobacter jejuni subsp. jejuni 81-...	145.0	[0..1]	[171..1]
gi\|88191425, gi\|... - gi\|88596584\|ref\|ZP_01099821.1\| transformation system protein [Campylobacter jejuni subsp. jejuni 84-...	143.0	[0..1]	[171..1]
gi\|85843355, gi\|... - gi\|86152470\|ref\|ZP_01070675.1\| transformation system protein [Campylobacter jejuni subsp. jejuni HB9...	142.0	[0..1]	[170..1]
gi\|153952006, gi... - gi\|153952006\|ref\|YP_001397576.1\| transformation system protein [Campylobacter jejuni subsp. doylei 2...	135.0	[0..1]	[169..1]
gi\|34499266, gi\|... - gi\|34499266\|ref\|NP_903481.1\| general secretion pathway protein G [Chromobacterium violaceum ATCC 124...	127.0	[0..2]	[132..9]
gi\|78701109, gi\|... - gi\|78701109\|ref\|ZP_00865562.1\| General secretion pathway protein G [Alkalilimnicola ehrlichei MLHE-1...	127.0	[0..2]	[132..7]
gi\|9946561, gi\|1... - gi\|9946561\|gb\|AAG04070.1\|AE004503_8 HxcT pseudopilin [Pseudomonas aeruginosa PAO1], gi\|15595878\|ref\|... gi\|84316810, gi\|... - gi\|84316810\|ref\|ZP_00965272.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Pseudomonas aer... gi\|126198296, gi... - gi\|84322880\|ref\|ZP_00970958.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Pseudomonas aer... gi\|107100147 - gi\|107100147\|ref\|ZP_01364065.1\| hypothetical protein PaerPA_01001168 [Pseudomonas aeruginosa PACS2] gi\|11352398 - pir\|\|G83560 probable type II secretion system protein PA0681 [imported] - Pseudomonas aeruginosa (st... gi\|116048588, gi... - gi\|53727267\|ref\|ZP_00138266.2\| COG2165: Type II secretory pathway, pseudopilin PulG [Pseudomonas aer... gi\|218893360, gi... - gi\|218893360\|ref\|YP_002442229.1\| HxcT pseudopilin [Pseudomonas aeruginosa LESB58], gi\|218773588\|emb\|...	126.0	[0..2]	[129..16]
gi\|150961212, gi... - gi\|94418200\|ref\|ZP_01298016.1\| hypothetical protein PaerP_01000354 [Pseudomonas aeruginosa PA7], gi\|...	126.0	[0..2]	[129..16]
gi\|88949148, gi\|... - gi\|88949148\|ref\|ZP_01151766.1\| General secretion pathway protein G [Halorhodospira halophila SL1], g...	126.0	[0..3]	[129..10]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAFTILEL VFVIVILGIL AAIALPKMSS SKDEAEVSKS LNNLKTLIND ISIYTLKNDH  60
   61 LSSIKTMSNV SGVENVDLSN FNGIKEVNFR VGDDKECLKL VFINKADFIL MGISSNEASK 120
  121 NAIINAANQS HEDLENIDFT SSSSNKACVI LSKNENFKNL ASKTYLLIGG M

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.221849
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits