YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57238058, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57238058, gi|....

Description	E-value	Query Range	Subject Range
gi\|40063673 - gi\|40063673\|gb\|AAR38462.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [uncultured marine ...	151.0	[0..4]	[146..25]
gi\|157828236, gi... - gi\|157828236\|ref\|YP_001494478.1\| cytochrome b6-f complex iron-sulfur subunit [Rickettsia rickettsii ... gi\|165908026, gi... - gi\|165932939\|ref\|YP_001649728.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Rickettsia ri... gi\|42453499 - gi\|42453499\|ref\|ZP_00153406.1\| COG0723: Rieske Fe-S protein [Rickettsia rickettsii]	146.0	[0..6]	[150..13]
UCRI_RICFE - Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1 UCRI_RICFE - Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis (strain ATCC VR-1525 / URRW...	145.0	[0..6]	[150..13]
gi\|228021570, gi... - gi\|229586520\|ref\|YP_002845021.1\| Ubiquinol-cytochrome c reductase, iron-sulfur subunit [Rickettsia a... gi\|28262089, gi\|... - gi\|34580704\|ref\|ZP_00142184.1\| cytochrome b6-f complex iron-sulfur subunit [Rickettsia sibirica 246]... gi\|238624593, gi... - gi\|238650495\|ref\|YP_002916347.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Rickettsia pe...	145.0	[0..6]	[150..13]
UCRI_RICCN - Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii (strain ATCC VR-613 / Mal... UCRI_RICCN - Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1	145.0	[0..6]	[150..13]
gi\|73667130, gi\|... - gi\|73667130\|ref\|YP_303146.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Ehrlichia canis ...	143.0	[0..6]	[159..16]
gi\|83591704, gi\|... - gi\|83591704\|ref\|YP_425456.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Rhodospirillum r... gi\|48763598 - ref\|ZP_00268152.1\| COG0723: Rieske Fe-S protein [Rhodospirillum rubrum]	143.0	[0..6]	[154..16]
gi\|157803492, gi... - gi\|157803492\|ref\|YP_001492041.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Rickettsia c...	143.0	[0..6]	[150..13]
gi\|88658045, gi\|... - gi\|88658045\|ref\|YP_507335.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Ehrlichia chaffe... gi\|67998932, gi\|... - gi\|68171639\|ref\|ZP_00545004.1\| Ubiquinol-cytochrome c reductase, iron-sulfur subunit [Ehrlichia chaf...	142.0	[0..6]	[159..16]
gi\|52698661, gi\|... - gi\|52698661\|ref\|ZP_00340069.1\| COG0723: Rieske Fe-S protein [Rickettsia akari str. Hartford], gi\|157...	142.0	[0..6]	[150..13]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSESRRSF MGFAFGSVAA VGGVFSLVAM KKTWDPLPSV KAAGFTTVDL SGMQDGELRT  60
   61 IEWRKKPIFI LKKDASMPKD EKRDVVVDNA AYTVVIGLCT HLGCIPAYQP SEQLFKCACH 120
  121 GGEFDTSGKN VFGPPPKPLE IPPFKIDGTK LVLGEEGPEY KKMIAEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1bccE
Description:	ISP subunit of the mitochondrial cytochrome bc1-complex, watersoluble domain; Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	2.49335432455269	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	2.49335432455269	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	2.34933960629529	bayes_pls_golite062009
oxidoreductase activity	2.05697629632752	bayes_pls_golite062009
electron carrier activity	2.04902042417359	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	1.98452254235856	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	1.89385129373834	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.48389934400767	bayes_pls_golite062009
catalytic activity	1.11718133018478	bayes_pls_golite062009
cation transmembrane transporter activity	1.09985761322321	bayes_pls_golite062009
ion transmembrane transporter activity	0.93092251382758	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: