YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237985, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237985, gi|....

Description	E-value	Query Range	Subject Range
CSRA_DESAG - Carbon storage regulator homolog OS=Desulfovibrio alaskensis (strain G20) GN=csrA PE=3 SV=1	101.0	[0..1]	[71..1]
gi\|90331476, gi\|... - gi\|90416723\|ref\|ZP_01224653.1\| carbon storage regulator [marine gamma proteobacterium HTCC2207], gi\|... gi\|90416723\|ref\|... - carbon storage regulator [marine gamma proteobacterium HTCC2207]	100.0	[0..1]	[70..1]
CSRA_PSYWF - Carbon storage regulator homolog OS=Psychrobacter sp. (strain PRwf-1) GN=csrA PE=3 SV=1	100.0	[0..1]	[60..1]
CSRA_GEOMG - Carbon storage regulator homolog OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)...	100.0	[0..1]	[72..1]
CSRA_MAGMM - Carbon storage regulator homolog OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) ... sp\|A0LC90\|CSRA_MAGMM - Carbon storage regulator homolog OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) ...	99.0	[0..1]	[74..1]
gi\|88773955, gi\|... - gi\|88794830\|ref\|ZP_01110535.1\| carbon storage regulator [Alteromonas macleodii 'Deep ecotype'], gi\|8...	99.0	[0..1]	[55..31]
gi\|88813105, gi\|... - gi\|88813105\|ref\|ZP_01128346.1\| carbon storage regulator [Nitrococcus mobilis Nb-231], gi\|88789589\|gb...	98.0	[0..1]	[65..1]
CSRA_PSYCK - Carbon storage regulator homolog OS=Psychrobacter cryohalolentis (strain K5) GN=csrA PE=3 SV=1	98.0	[0..1]	[60..1]
CSRA_SHESM - Carbon storage regulator homolog OS=Shewanella sp. (strain MR-4) GN=csrA PE=3 SV=1 CSRA_SHESR - Carbon storage regulator homolog OS=Shewanella sp. (strain MR-7) GN=csrA PE=3 SV=1 CSRA_SHEPA - Carbon storage regulator homolog OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=csrA PE=3 ... CSRA_SHEB8 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS185) GN=csrA PE=3 SV=1 CSRA_SHEON - Carbon storage regulator homolog OS=Shewanella oneidensis (strain MR-1) GN=csrA PE=3 SV=1 SO3426 - carbon storage regulator CSRA_SHEB5 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=csrA PE=3 S... CSRA_SHEB2 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS223) GN=csrA PE=3 SV=1 CSRA_SHEHH - Carbon storage regulator homolog OS=Shewanella halifaxensis (strain HAW-EB4) GN=csrA PE=3 SV=1 CSRA_SHEB9 - Carbon storage regulator homolog OS=Shewanella baltica (strain OS195) GN=csrA PE=3 SV=1 CSRA_SHESA - Carbon storage regulator homolog OS=Shewanella sp. (strain ANA-3) GN=csrA PE=3 SV=1	98.0	[0..1]	[55..1]
gi\|124509854, gi... - gi\|124546586\|ref\|ZP_01705653.1\| carbon storage regulator, CsrA [Shewanella putrefaciens 200], gi\|124... CSRA_SHESW - Carbon storage regulator homolog OS=Shewanella sp. (strain W3-18-1) GN=csrA PE=3 SV=1 CSRA_SHEPC - Carbon storage regulator homolog OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=csrA PE...	98.0	[0..1]	[55..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILSRKENE SIIIGEGIEI KVVQTGKGYA KIGIEAPKSL MILRKELVQQ VKDENLHSVV  60
   61 QNDIKLDDLS KKLIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1t3oA
Description:	Solution structure of CsrA, a bacterial carbon storage regulatory protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits