YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57238029, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57238029, gi|....

Description	E-value	Query Range	Subject Range
gi\|153951059, gi... - gi\|153951059\|ref\|YP_001397743.1\| putative cytochrome oxidase maturation protein, cbb3-type [Campylob... gi\|157386384, gi... - gi\|157415420\|ref\|YP_001482676.1\| small hydrophobic protein [Campylobacter jejuni subsp. jejuni 81116...	93.0	[0..1]	[68..1]
gi\|57017098, gi\|... - gi\|57241906\|ref\|ZP_00369846.1\| small hydrophobic protein Cj1154c -related protein [Campylobacter ups...	86.0	[0..1]	[65..1]
gi\|57168036, gi\|... - gi\|57168036\|ref\|ZP_00367175.1\| small hydrophobic protein Cj1154c -related protein [Campylobacter col...	85.0	[0..1]	[66..1]
gi\|34482475 - gi\|34482475\|emb\|CAE09476.1\| hypothetical protein [Wolinella succinogenes] gi\|34556761 - gi\|34556761\|ref\|NP_906576.1\| hypothetical protein WS0326 [Wolinella succinogenes DSM 1740]	83.0	[0..1]	[60..1]
gi\|32262704, gi\|... - gi\|32266653\|ref\|NP_860685.1\| hypothetical protein HH1154 [Helicobacter hepaticus ATCC 51449], gi\|322...	79.0	[0..1]	[60..1]
gi\|107837300, gi... - gi\|108563527\|ref\|YP_627843.1\| cation transport subunit for cbb3-type oxidase [Helicobacter pylori HP... gi\|2314326, gi\|1... - gi\|2314326\|gb\|AAD08214.1\| predicted coding region HP1163 [Helicobacter pylori 26695], gi\|15645777\|re... gi\|210135322, gi... - gi\|210135322\|ref\|YP_002301761.1\| cation transport subunit for cbb3-type oxidase [Helicobacter pylori... gi\|15612155, gi\|... - gi\|4155676\|gb\|AAD06661.1\| putative component of cation transport for cbb3-type oxidase [Helicobacter... gi\|7465200 - pir\|\|C64665 probable component of cation transport for cbb3-type oxidase - Helicobacter pylori gi\|207091768 - gi\|207091768\|ref\|ZP_03239555.1\| cation transport subunit for cbb3-type oxidase [Helicobacter pylori ...	76.0	[0..1]	[59..1]
gi\|109947840, gi... - gi\|109947840\|ref\|YP_665068.1\| hypothetical protein Hac_1330 [Helicobacter acinonychis str. Sheeba], ...	76.0	[0..1]	[60..1]
gi\|222538720, gi... - gi\|57241792\|ref\|ZP_00369736.1\| small hydrophobic protein Cj1154c -related protein [Campylobacter lar...	74.0	[0..1]	[66..1]
gi\|78776776, gi\|... - gi\|78776776\|ref\|YP_393091.1\| cytochrome oxidase maturation protein cbb3-type [Sulfurimonas denitrifi...	61.0	[0..4]	[58..5]
gi\|112803980, gi... - gi\|154173919\|ref\|YP_001408578.1\| hypothetical protein CCV52592_0266 [Campylobacter curvus 525.92], g...	59.0	[0..2]	[65..3]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSIIMMMIG VSILAFFIIL ATLLWGIKNK QFDDDYKFTT LNDDEDSLRD AIELERRKKE  60
   61 ALDKKRLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits