YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237750, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237750, gi|....

Description	E-value	Query Range	Subject Range
gi\|7442577 - pir\|\|F72756 probable multiple sugar-binding transport ATP-binding protein APE0043 - Aeropyrum pernix... gi\|14600403, gi\|... - gi\|5103431\|dbj\|BAA78952.1\| 381aa long hypothetical multiple sugar-binding transport ATP-binding prot...	344.0	[0..2]	[242..17]
gi\|119720071, gi... - gi\|119720071\|ref\|YP_920566.1\| ABC transporter related [Thermofilum pendens Hrk 5], gi\|119525191\|gb\|A...	341.0	[0..2]	[242..4]
gi\|15643988, gi\|... - gi\|4981786\|gb\|AAD36307.1\|AE001779_9 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|281412971\|ref... - ABC transporter related protein [Thermotoga naphthophila RKU-10] gi\|170289367, gi... - gi\|170289367\|ref\|YP_001739605.1\| ABC transporter related [Thermotoga sp. RQ2], gi\|170176870\|gb\|ACB09... gi\|7442603 - pir\|\|A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	340.0	[0..2]	[242..4]
gi\|159794850, gi... - pir\|\|A71243 probable maltose/maltodextrin transport ATP-binding protein - Pyrococcus horikoshii, gi\|... gi\|14590136, gi\|... - gi\|3256589\|dbj\|BAA29272.1\| 362aa long hypothetical maltose/maltodextrin transport ATP-binding protei...	338.0	[0..2]	[242..4]
gi\|18894131, gi\|... - gi\|18978305\|ref\|NP_579662.1\| putative sugar transport ATP-hydrolyzing [Pyrococcus furiosus DSM 3638]...	338.0	[0..2]	[242..4]
gi\|18312553, gi\|... - gi\|18312553\|ref\|NP_559220.1\| multiple sugar-binding transport ATP-binding [Pyrobaculum aerophilum st...	337.0	[0..2]	[242..4]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIELKNVNKY YGTHHVLKNI NLSVKEGEKL VIIGPSGSGK STTIRCMNGL EEVSSGEVVV  60
   61 NNLVLNHKNK IEICRKYCAM VFQHFNLYPH MTVLQNLTLA PMKLQKKSKK EAEETAFKYL 120
  121 KVVGLLDKAN VYPATLSGGQ QQRVAIARSL CTKKPYILFD EPTSALDPET IQEVLDVMKE 180
  181 ISHQSNTTMV VVTHEMGFAK EVADRIIFME DGAIVEENIP SEFFSNPKTE RARLFLGKIL 240
  241 KN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.154902
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits